MmuINT0041928 @ mm9
Intron Retention
Gene
ENSMUSG00000027408 | Cpxm1
Description
carboxypeptidase X 1 (M14 family) [Source:MGI Symbol;Acc:MGI:1934569]
Coordinates
chr2:130221372-130221704:-
Coord C1 exon
chr2:130221565-130221704
Coord A exon
chr2:130221460-130221564
Coord C2 exon
chr2:130221372-130221459
Length
105 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TTCTCTATCTCTGCGGCCAGGTA
3' ss Score
8.39
Exon sequences
Seq C1 exon
TCAGGTCTGGAGGACGGTGACCTGTATGATGGCGCTTGGTGCGCTGAGCAACAAGACACTGAACCTTGGCTTCAGGTGGATGCAAAGAATCCCGTCCGCTTCGCAGGAATTGTTACACAGGGCAGAAACTCTGTGTGGAG
Seq A exon
GTGAGGCTCACGCTTAGCCTGGAAGTTGTTAGTGATCAGACTTGGAAGTGCCACCACTTTAGTGGCTCTTCAGGGTCACTAATGTTTCTCTATCTCTGCGGCCAG
Seq C2 exon
GTATGACTGGGTCACATCATTCAAGGTCCAGTTCAGCAATGACAGCCAGACCTGGTGGAAGAGTAGGAACAGTACTGGAATGGACATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027408-Cpxm1:NM_019696:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=FE(32.4=100)
A:
NA
C2:
PF0075420=F5_F8_type_C=FE(20.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGTCTGGAGGACGGTGA
R:
TGTCCATTCCAGTACTGTTCCT
Band lengths:
226-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: