DreINT0051660 @ danRer10
Intron Retention
Gene
ENSDARG00000098158 | cpxm1b
Description
carboxypeptidase X (M14 family), member 1b [Source:ZFIN;Acc:ZDB-GENE-141212-305]
Coordinates
chr14:51615853-51617581:+
Coord C1 exon
chr14:51615853-51615937
Coord A exon
chr14:51615938-51617430
Coord C2 exon
chr14:51617431-51617581
Length
1493 bp
Sequences
Splice sites
5' ss Seq
GCGGTATGT
5' ss Score
9.45
3' ss Seq
GCACTGTTGTATGCTAACAGGTG
3' ss Score
7.42
Exon sequences
Seq C1 exon
CTTGGACTATGTGGAAAGCTTCAAGGTTCAGGTCAGCAATGACACCATCAAATGGAAGCCGTGCATGAACGGGACACAAGAGGCG
Seq A exon
GTATGTTGACACTTTATTACCTTCATTAACTGTCAGAAACTATATATATATATTTATGTGCATATATATTTAAGTCAGAATTATTAGCCCTCCTGAATTATTCGCCCTACTTTATATTTTTTCTTAGTTTTAATAACTTAATACAAATAATTGATTAATTTCTCTTCTCCATGATGACAGCACATAATATTAGTCTAGATATTCTTCAAGACACTAGTGTTCAGCTTACAGTGACATGTAAAGGCTTCACTAGGGTAATTAGGGTAAAGTTAGGGTAATTAGGCAAGTTATTGTATAACAGTGGTTTGTTCTGGAGACAATCCAACACTAATATTGCTGAAGGGGCCAATAATATTGAGCTTAACATGACTTTAAAACTATTAAAAGCTGCTTTTGTTCAAGCCGAAATAAACAAATAAGACTTTCTCCAGATAAACAAATTTCTTTTTTTTTTTTTTTTATTAAAGAGGTCGATCAAATACAATTACATACATAGAGACAAATAATACAAATAAATAAACAAATACACAGAAATACACACAAAGACAAATAAACACCAGGGTAACAAAAATAAAACTGATAAAATAAAGTTACACCTTAAAGAGACACAAAGGAAGAATATAAGGATACCGTTTTTGTTGCTTTTGGATGAAGAGAATGCTGGATAGTTTCCAAATATTGGTCTAGGTCGATTTTGAACAGATCAAAAAAAGGTTTAGAGCCACTAAACTTCTGTTTGTGAATATGAAACTTGGCTAATAGAATACACAAATTAATTATATATACTTTTTCCATGTTTTCTTTAGAATCATCAAACAATCCAAACAATATAACTTTAAAAGAAAAGGAAAAGTCACCCATAATATAAGATTGAATAAAGATCAACAAATCTGACCAGAATCTCTCTGTGAAGGAGCACTGCCAGAACAAATGAATAGTCTTCCTCCGAAGAGTGTCAGAATGAGCAGTTTAATCAATGTCAGGCTTATATTTCTGAAGACAGACCTTAGTAGCTCCAGATAAACAAATATTAGAGGAAACACTGTGAACAATTCCTGAATCTGTTCAACATCATCTGTGGAATATTTGGAAAAGGAAAATTCACCGGAAGCCGAATAATTCTGACTTCAACTGTATAAATATATCATTTTGTGTAATCATGATTGCGCTTTCTCCCATAATGCAGCAGCCCTAACATTAACCTGTTACTGGATGTTTATCAGTGGCTGAAACACACTAGCTGTGCACATCCTCTATAGCAGGGAAGTCAAACTCAATTCCTGGAGGGCCGCTGCTCTGCACAGTTTAGTTCCAACCCTGCTCCAACACACTTACCTGTAGGTTTCCCACAAGCCTGAAGGACTCAATTACTTTGATCAGGTGTTTAATTAGGGTTGGAACTAAACTGTGCAGAGCTGCGGCCCTCCAGGAATTAAGTTTGGCATCCCTGCTCTGTAGGCTCTGTATGCTGAAGCACTGTTGTATGCTAACAG
Seq C2 exon
GTGTTTGAGGGAAACACAGACAGTGAAACGCCAGTGCTAGCGCTTCTGCCTGAGCCGGCGGTGGCACAATACATCCGCATTAACCCACAGAGCTGGTTCAAGAATGGCACCATCTGCCTGAGAGCTGAAATTATGGGATGCGAGCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098158:ENSDART00000161245:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.039
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=FE(19.9=100)
A:
NA
C2:
PF0075420=F5_F8_type_C=PD(30.5=84.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTATGTGGAAAGCTTCAAGGT
R:
GGCAGCTCGCATCCCATAATT
Band lengths:
231-1724
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]