HsaINT0041081 @ hg38
Intron Retention
Gene
ENSG00000088882 | CPXM1
Description
carboxypeptidase X, M14 family member 1 [Source:HGNC Symbol;Acc:HGNC:15771]
Coordinates
chr20:2797192-2798058:-
Coord C1 exon
chr20:2797968-2798058
Coord A exon
chr20:2797343-2797967
Coord C2 exon
chr20:2797192-2797342
Length
625 bp
Sequences
Splice sites
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
3' ss Seq
AGAGAACTTGCTGCCCCCAGGTA
3' ss Score
4.51
Exon sequences
Seq C1 exon
GTATGACTGGGTCACATCATACAAGGTCCAGTTCAGCAATGACAGTCGGACCTGGTGGGGAAGTAGGAACCACAGCAGTGGGATGGACGCA
Seq A exon
GTGAGTGGTCCCACTGTGGCTGGGGCCTCCATGCTGGGAGTTGGGCACCCAGTCCAGGCTAGGCTGAGGCTCCTCTGAGGACAAGGAATAGACGCCAGCTTAGGCTTCCCAGGGGGGTGTGGCTTGTTGTCAAGAGGGTGGCACACGGCAGGCACCATTGGGAGCCAGCTGCTTTGGGACATGCCCACATCCTCCCCAGATAATGCCACCACAGGGTGGGTGCTGCTTCACGGTACAGCTTCCTCCTGGCGTGCCCCTTCTGGCCCGGGGCCTCTGGTCCACATCACTTCTTGCCTTCTCGTGGTTCTGACTTCCGCATCTCATGGACCTCTTTTTACAGCAGGCTACAATGTGGAGTCCTGGCCAGCTCTAGGATTGGCTTCCCCCGAGTCATGTGGCCAAACTGGTCTAATGAACTGTGTCCAATCCAGAGAGCAAGGCTGCCTAGGGCTGCCCATTGGCAGGGGCTGTGGGCCGGGGTCTGTGTTTGATGCACAGTGCAAGTCTCTAGCTGAGCCCACTAGGGTGGGGAGACAGTAAGCTTGGAGGCCTGAGCTCCTTCCCTGGGTCCTGGGCCAGGCTTCTGGGGTTTGAGCAGCCACAACAGAGAACTTGCTGCCCCCAG
Seq C2 exon
GTATTTCCTGCCAATTCAGACCCAGAAACTCCAGTGCTGAACCTCCTGCCGGAGCCCCAGGTGGCCCGCTTCATTCGCCTGCTGCCCCAGACCTGGCTCCAGGGAGGCGCGCCTTGCCTCCGGGCAGAGATCCTGGCCTGCCCAGTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000088882:ENST00000380605:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=NA C2=0.157
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=FE(21.1=100)
A:
NA
C2:
PF0075420=F5_F8_type_C=PD(30.3=84.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTGGGTCACATCATACAAGG
R:
TGAGACTGGGCAGGCCAG
Band lengths:
238-863
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development