DreINT0051784 @ danRer10
Intron Retention
Gene
ENSDARG00000060081 | crb2b
Description
crumbs family member 2b [Source:ZFIN;Acc:ZDB-GENE-060610-1]
Coordinates
chr8:2842801-2845819:+
Coord C1 exon
chr8:2842801-2842917
Coord A exon
chr8:2842918-2845692
Coord C2 exon
chr8:2845693-2845819
Length
2775 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACA
5' ss Score
5.49
3' ss Seq
GTGTGTGTGTTGTTCTGCAGGTG
3' ss Score
12.06
Exon sequences
Seq C1 exon
ATGGCGGTTTCCTCCTCGTGAGTGTGATGTGGATCTGCAGTGTGAGAATGGAGGCGTTTGCAGTGAAGGATCATGGGGAGCCAACTGTACCTGCAGACCAGGATTCACTGGAGTCAG
Seq A exon
GTGACATCACATGACCACATCACAACCCCACTCTTCAAGAAAAATATCCATCATTTAGCAGTTTTCTGTATTTCGGCATTGATGTTTTTATTTTTATATATTCTTTTTTGTTTTGAAGGGGGCGGGGTCTTGTCTACCTTCTTTTTTGTCCTCGGCTGATGATATGCCTGAATCTGCATTTATTTATTTAAAATTTCCATTGCACTGCAATTTTTCCACCATTAAATCTATCTAGACATTTCCTATTAATGATGTCACACGTCTAATTTCATTTAGAAATTCAATTTTTATCTGTTTTAACTTGTTTTTGTATTGTTTAAATGGTTAAAATTGCAATACTGTATGGTATTGTTAAGGTTTTAACACTATTACTGCTTTTATCGATACCACTTATCGGTTTGGTACTCTAACAGTTCTCTTATTAGTACTTTTTGTAGTGTTTTTTTAATGAAAAAAACAAATTAACAACAAAATTAACAACTCTTTATTTTATTATTACGTTTTAATGTAAAATAAAACAAAACCAATAATTGGTAAACAAATAAATATTTTTTTTCCTGTAAAAGATTGTACAATGGTTTGAAGGAAAATGACTCTCACTTTTTAACCATCTTCTGGAGAAAAATCAACATCTTTGACTTTTCTGGCAGAAGTCAGGATCTTTCTTGGTTTGTTGTGCTCCCTGCAGTTGAAAATACCCTCTTTGAGTTGCAAAATGCAGTTAAATGAGATTATGTTTATGATTTTTATTGAACACATTCACATGAGTTAACAGTGTTTTGGGTTTTAACTGTGTGACAGTTTTAGAGCATCTTGCAATGTAAAAATAAGCTGTTTCTTTATAATTTATTAATAAGTACAGTTTATTATTAGGCTATTTATAGTCTATATTTGTAAACACAGCTGATGTAAAAGTATTTTTATTTTTTAAGATTTATTTAGGCTACTGCAGAAGAAATACTGTTTTCATTGTAACTGAATGTGTGTGTTTGTTTAACTATTAATATTACACTAATTTAGGTGATTGACTGCTGACATTTAGATTTACATTTAGTCATTTAGCAGACCCTTTTATCCAAAGCGACTTACAAATGAGGACAAGGAAGCAATTTACACAACTATAAGAGCAACAATGATTAAGTGCTGTAGGCAATTTTCAGGTATGTGAAGTGTAAGACGCAATGCATTAGTGATGTAAGTTTTTTTTTTTTTTTTTTTGTAGTAGTACAGTTAGCGGTGGAGCCAGAGAGGCAATTGCAGACTAGGAAGGGAAGTGGAGACTAAATAGAGTTTTTAGTTGTTTCTTGAAGACAGCGAGTGACTCTGCCGTTCTGATGCAGTTAGGGAGTTCATTCCACCAACTGGGCAGATTGAACGCGAGCGTTCGGGAAAGTGATTTCTTCACTCTTTGGGATGGAACCACGAGGCGATGTTCATTCACAGAACGCAAGTTTCTGAAGGGCACATACATCTGCAGAAGTGAGAGCAGATAAGAAGGAGCAAAGCCAGAAGTCACTTTGTAGGTAAACATCAGAGCTTTGAATTTGATGCGAGCAGCAACTGGCAGCCAGTGCAAACGGATGAGCAGCAGAGTGACGTGTGATCTTTTAGGTTCATTAGAGACCACTCGTGCTGCTGCGTTCTGGAGCAGCTGAAGAGGTTTGATAGAGTTAGCTGGAAGCCCGGCTAGTAGAGAGTTGCAAAAGTCCAGTCTGGAGAGAACAAGAGCTTGAACAAGGAGTTGAGCTGCATGTTCAGATAGGAAGGGTCGGACCTTTCTGATGTTATAGAGTGCGAATCTGCAAGATCGAGCAGTTCTAGAAATGTGGTCAGAGATGTTTAGTTGGTCATCAATCGTTACTCCAAGGCTTTTCACCATTTTTGATGCAGTAATGGTTGCCCCATGACATAAAGATGTGGATGATGTAATGTTGCAGTTAGTAGCAGTCAAAAACTTTTTATTACATTGCATTGCTGTAGCCCGATTGCCTGCATTTCCGCTTATACAAGAAAACAACTTGCTGCGTTTGTTGCAACGGGCATTGTGGCTGTCCACTGAGGAAATACAACCCGTTTGGTTCTCTCCATAAGCTGGTTCACACGGGTCTGTGTGCGCTTAGTGCGAGCCTCCGCTGAGTGCGTGCGCACAGCCGAGAACTGTGAAGGCTTTTACAAGTGATGCTCTCGCCAGAAACACAGGCATTTATCATGAGATGCCAACTGTGCAGACGAATATCAAATATCGCAAATTAGAAAAGGTTGGTCAGTTAAATTATGCTACTGTGTGTAATGTCTATTCAGCAATAACTCTCCAGTACCGATAGCAGAACTGTTAACGTCAGAGCTTATCGATACTTCGGTCTTTTATAATGTAGCACCGATACCGATAAAGTGCAGTTTTGTTACCCATCCCTATCTAAGATCATGTCAAATCGATTTAAATCAGGAAACGTGTAAACTAGATGAACTAAAATAAAGAAGTAAAGCAATAAGATAAATTGAAATCTGCACTTAATTATTTAAACCCTTTCCACATTATATAATTTTTCAATTGTAATATTGTAAGGTCATGTCGAATAATTGAAGTCCGGAAACTTATTTAATAATACAATGATTTTTAAATTGAGTTTTTTACACAAACACTTTCAATCAATAAGTACTGTACATCTCTAAACACAATAAGAAATCTGCATTAGCTTATTTAAAGAACTTCCATTGCATATCAATTCCAATTGTCATACAGGTGTGTGTGTGTGTGTGTGTGTTGTTCTGCAG
Seq C2 exon
GTGTGAGCTGGATATAGACGAGTGTGTGTCCGAGCCGTGTCTGAACGGAGGCTCATGTGTGAACAGACACAATCTCTACTTCTGTGAGTGTTTGCCGGACTTCAGTGGAGAAAACTGTCAGATTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060081:ENSDART00000084305:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=80.0)
A:
NA
C2:
PF0000822=EGF=PD(0.1=0.0),PF0000822=EGF=WD(100=72.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]