DreINT0053251 @ danRer10
Intron Retention
Gene
ENSDARG00000068680 | ctrl
Description
chymotrypsin-like [Source:ZFIN;Acc:ZDB-GENE-040912-147]
Coordinates
chr15:37926171-37926475:-
Coord C1 exon
chr15:37926372-37926475
Coord A exon
chr15:37926251-37926371
Coord C2 exon
chr15:37926171-37926250
Length
121 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
CCAACAATGTTTTTACACAGCAA
3' ss Score
4.82
Exon sequences
Seq C1 exon
GCTGTGGAGTGCCAGCCATTAAGCCTGTTATTAGTGGCTACAACAGAATTGTGAATGGAGAGAATGCAGTGTCTGGCTCCTGGCCCTGGCAGGTCTCTCTCCAG
Seq A exon
GTAACTTGTCTTAATTATGCAAAACTCTTATTAATCAACTAGAGTTTTTGTTGTTGTGTTGTTGTTGTTATAAACAAAACTGCATGATAAGGGCATTAAAACCAACAATGTTTTTACACAG
Seq C2 exon
CAATCCAATGGCTTCCATTTCTGCGGTGGATCCCTGATCAACCAGTATTGGGTTGTCACCGCTGCCCACTGCCGTGTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068680:ENSDART00000099425:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(10.1=51.4)
A:
NA
C2:
PF0008921=Trypsin=FE(11.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTGCCAGCCATTAAGC
R:
AGTGGGCAGCGGTGACAA
Band lengths:
170-291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]