RnoINT0043250 @ rn6
Intron Retention
Gene
ENSRNOG00000019068 | Ctrb1
Description
chymotrypsinogen B1 [Source:RGD Symbol;Acc:2444]
Coordinates
chr19:43908498-43908769:-
Coord C1 exon
chr19:43908666-43908769
Coord A exon
chr19:43908578-43908665
Coord C2 exon
chr19:43908498-43908577
Length
88 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TTCCTTTTCGTCCTCCCCAGGAT
3' ss Score
11.89
Exon sequences
Seq C1 exon
GCTGTGGAGTCCCTACCATCCAACCCGTGCTGACTGGCCTGTCCAGGATCGTCAACGGAGAGGATGCTATTCCCGGCTCCTGGCCCTGGCAGGTGTCTCTGCAG
Seq A exon
GTGAGAGGAGGATTCTGGGAACATGAGTGCCTGTACTGGTGGTGCTGTCAAGGTGGGACCCGCTAACCTTCCTTTTCGTCCTCCCCAG
Seq C2 exon
GATAAAACTGGCTTCCATTTCTGCGGGGGCTCCCTCATCAGCGAGGACTGGGTGGTCACTGCTGCCCACTGCGGGGTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019068:ENSRNOT00000026017:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(8.1=51.4)
A:
NA
C2:
PF0008921=Trypsin=FE(11.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGAGTCCCTACCATCCA
R:
CAGCAGTGACCACCCAGTC
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]