HsaINT0043003 @ hg19
Intron Retention
Gene
ENSG00000168928 | CTRB2
Description
chymotrypsinogen B2 [Source:HGNC Symbol;Acc:2522]
Coordinates
chr16:75239811-75240091:-
Coord C1 exon
chr16:75239988-75240091
Coord A exon
chr16:75239891-75239987
Coord C2 exon
chr16:75239811-75239890
Length
97 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CCTCCCCATCTTGCTCACAGGAC
3' ss Score
9.91
Exon sequences
Seq C1 exon
GCTGCGGGGTCCCCGCCATCCACCCTGTGCTCAGCGGCCTGTCCAGGATCGTGAATGGGGAGGACGCCGTCCCCGGCTCCTGGCCCTGGCAGGTGTCCCTGCAG
Seq A exon
GTGAGGGGGTTCTGCAAGGTGGGGGGCACCCTGGGTAGGGGCCAGGCTGGGGGTGCCCCCGGGTGGGAGGTGCTGACCCTCCCCATCTTGCTCACAG
Seq C2 exon
GACAAAACCGGCTTCCACTTCTGCGGGGGCTCCCTCATCAGCGAGGACTGGGTGGTCACCGCTGCCCACTGCGGGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168928-CTRB2:NM_001025200:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(8.1=51.4)
A:
NA
C2:
PF0008921=Trypsin=PU(22.8=96.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCATCCACCCTGTGCT
R:
GGTGACCACCCAGTCCTCG
Band lengths:
151-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)