GgaINT0023314 @ galGal3
Intron Retention
Description
NA
Coordinates
chr11:1946792-1947015:-
Coord C1 exon
chr11:1946908-1947015
Coord A exon
chr11:1946810-1946907
Coord C2 exon
chr11:1946792-1946809
Length
98 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
ACAGCCGCTCTCGCCGGCAGCGC
3' ss Score
6.29
Exon sequences
Seq C1 exon
GCAGGCTGCGGTGTGCCCGCCATCACGCCCGTCATCCGTGGCTACAACCGCATCGTGAACGGGGAGCCGGCGGTGCCCGGGTCCTGGCCCTGGCAGGTGTCCCTGCAG
Seq A exon
GTGAGCGCCCACCCATTGCGGGGATGGGGCCGGGGATGGGGCTGGGGATGGGCATGGGGCCGCGCGGTTGTGGGGCTGACAGCCGCTCTCGCCGGCAG
Seq C2 exon
CGCTACGGCAACTTCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002838:ENSGALT00000004479:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(72.0=50.0)
A:
NA
C2:
PF0008921=Trypsin=FE(20.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCACGCCCGTCATCCG
R:
GTGGAAGTTGCCGTAGCG
Band lengths:
106-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]