DreINT0053252 @ danRer10
Intron Retention
Gene
ENSDARG00000068680 | ctrl
Description
chymotrypsin-like [Source:ZFIN;Acc:ZDB-GENE-040912-147]
Coordinates
chr15:37924668-37926250:-
Coord C1 exon
chr15:37926171-37926250
Coord A exon
chr15:37924750-37926170
Coord C2 exon
chr15:37924668-37924749
Length
1421 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAAA
5' ss Score
-3.08
3' ss Seq
AAACCTTGTTTTTCTGCTAGGGC
3' ss Score
7.35
Exon sequences
Seq C1 exon
CAATCCAATGGCTTCCATTTCTGCGGTGGATCCCTGATCAACCAGTATTGGGTTGTCACCGCTGCCCACTGCCGTGTTCA
Seq A exon
GTAAAAACCTTTATATTTTCATAAACTGAGTCTAAATATTGGTTTTATGCTTCACTTTTTTATATTTATTTATTTATATCACAACCATGACATTGAAAGAAAAGAAAAAGAAAAGGAAACTTACAAATAAAATACAGTAGGTGATACTTTAATATGGCCATTACTGAAGCTCTATGTACCGCCGCCGTTCTAAAGGAGAAAAATGTGTTTTTTAGGTATGACCACAGTTTGGGACTATGCCGCCAGGTGGCACAAAGGGACGAGATGCGAACGGACAGAAATAGCCTATACATTAGCTGTAAATACTCTGCTACTTGTAAATAAAAATAAACAATGAAACAAAGCATTATAATTCCTTCAATAATCATTAAAAAGACAACTAAGCTACAATATTTAAGATGACATTGACAGGATCAAACGTATGATTCCTTTTTAATATTAAGATATTTACTTTGAAATCTAAATGTATATTTTCCTGCCAATCTTGCTATTAAACACTTTGCATGAACATGCTGCCAGCAGCTGTGAAGCAGTGAAGCATTAATAAAATCCTTATTTTCGAAGGAGCAGAACAAATCATTGCACAGTTGGACGGGCGCAAAATAAAAATATAATTCATATATTTTTCTTGAAAAAATAAATTTAAACGAATATCATTTGCTATAATTTGTATTTTAATTCTAATGTATTTTTCGTTGGTCAGTTAACTGCTAGATAAAAAAGAATAACAAAATAAGCTTTGGGGTGAAGTGCTTCAAAACAAGTCTGCTATATGCTTTAGCACCAAAACAAGCTGTCGTGAGATTGTGTTGGTTTGTTAAATAAAATAATAATCTAGCCTAAACAAAATTAAAGTGATATGTCATTCCAGAGTTTCTGAGTTGACAGTGATAAAACAGAGTCGATCATATTTGTTCAGTCCATATGTTATCATTTAACATGAGATGCTTGGCAACATCTAAAAGAATAGCTCGATAAATCAAAGTTAACAGTGAGGCAAAACATTGTCATATTTTTAATGAATACGTTATCATTTGACATGAAGAGTTTGATAACACCCAAAGAGTACAAAATAGAAATAACTTTGAAGAAAACATTTTATTAAATAAAATTAAAATAAAGAAATAAATTTATTCTAAAGGCCAGGGAGTTCTTCAAATATTCAAATATTCTTCAAGTATTTAAGAAAGGGAGACCATTTGTCTTGCGTTTCGAGCCTCGAATCATGTATTTAATCTTTTCCAATTGAATGTAAGACATAACTTCATTTATCCAGCAAGCGTGTGCTGGAGGGTCTACTCTTTTCCACTTGAATAATATTAAACGTCTTGCTAGTAGAGTAGTAAAAGCAATAACTGAATGCATATCTTTACTGAGATCTATATTCCATGCTTCCAATTTAAACCTTGTTTTTCTGCTAG
Seq C2 exon
GGCTGGATATCACTATGTGATTCTTGGAGAGCATGACCGCGGCTCCAGCGCTGAGTCTGTTCAGGTTAAAAGCATCGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068680:ENSDART00000099425:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(11.7=100)
A:
NA
C2:
PF0008921=Trypsin=FE(12.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]