HsaINT0043017 @ hg19
Intron Retention
Gene
ENSG00000141086 | CTRL
Description
chymotrypsin-like [Source:HGNC Symbol;Acc:2524]
Coordinates
chr16:67964629-67964902:-
Coord C1 exon
chr16:67964823-67964902
Coord A exon
chr16:67964711-67964822
Coord C2 exon
chr16:67964629-67964710
Length
112 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CTAATCCCACCCCCTTGCAGCCC
3' ss Score
9.17
Exon sequences
Seq C1 exon
GACAGCAGCGGCTTCCACTTCTGCGGTGGTTCTCTCATCAGCCAGTCCTGGGTGGTCACTGCTGCCCACTGCAATGTCAG
Seq A exon
GTGAGTGCCTGCATTCCACCTGCCCCGCCCCTCGCCTCTTCCTGCCTCCTCCCCTGGCTGTCCCCCTCTCGCGCTGGCCTCCCTGCAGCTGCCTAATCCCACCCCCTTGCAG
Seq C2 exon
CCCTGGCCGCCATTTTGTTGTCCTGGGCGAGTATGACCGATCATCAAACGCAGAGCCCTTGCAGGTTCTGTCCGTCTCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141086-CTRL:NM_001907:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.049
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(5.8=33.3),PF067527=E_Pc_C=PU(3.7=14.8)
A:
NA
C2:
PF0008921=Trypsin=FE(21.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCGGCTTCCACTTCTG
R:
GAGACGGACAGAACCTGCAAG
Band lengths:
154-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)