MmuINT0043669 @ mm10
Intron Retention
Gene
ENSMUSG00000031896 | Ctrl
Description
chymotrypsin-like [Source:MGI Symbol;Acc:MGI:88558]
Coordinates
chr8:105932824-105933059:-
Coord C1 exon
chr8:105932980-105933059
Coord A exon
chr8:105932906-105932979
Coord C2 exon
chr8:105932824-105932905
Length
74 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
CATTCCCATTATCCTTGCAGGCC
3' ss Score
9.11
Exon sequences
Seq C1 exon
GATAACACCGGCTTCCACTTCTGCGGTGGTTCTCTCATCAGTCCGAACTGGGTGGTCACGGCTGCCCACTGCCAAGTCAC
Seq A exon
GTGAGTGTATCCCCCTCCCTTGGATGCCCGCTCTGAAACCACTTAGCAGCTGCCCATTCCCATTATCCTTGCAG
Seq C2 exon
GCCTGGACGCCACTTTGTCGTTTTGGGAGAATATGACCGATCTTCCAATGCTGAACCTGTGCAGGTCCTCTCGATCGCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031896:ENSMUST00000034368:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(11.6=100)
A:
NA
C2:
PF0008921=Trypsin=FE(12.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACACCGGCTTCCACTTCTG
R:
CCTTGCGATCGAGAGGACCT
Band lengths:
160-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types