DreINT0178843 @ danRer10
Intron Retention
Gene
ENSDARG00000093844 | zgc:136461
Description
zgc:136461 [Source:ZFIN;Acc:ZDB-GENE-060519-7]
Coordinates
chr7:34796909-34797161:+
Coord C1 exon
chr7:34796909-34796988
Coord A exon
chr7:34796989-34797082
Coord C2 exon
chr7:34797083-34797161
Length
94 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TAGTCAAATCTTTTTATTAGGAC
3' ss Score
4.31
Exon sequences
Seq C1 exon
GACTCCACCGGCTTCCACTTCTGCGGAGGCTCCCTGATCAACGAGTGGTGGGTTGTGACTGCTGCTCACTGCAACGTCAG
Seq A exon
GTAAGACAGCATTGACGCTTTGTTTCTCCATCATGCAATGAATTTAAGACGTATGTGCAAATTTGAGAGTAAAATAGTCAAATCTTTTTATTAG
Seq C2 exon
GACCTCTCACCGTGTCATCCTGGGTGAGCATGATCGTTCCTCCAATGCTGAGCCCATTCAGACCATGACCGTTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093844:ENSDART00000022139:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(11.7=100)
A:
NA
C2:
PF0008921=Trypsin=FE(11.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCCACCGGCTTCCACTTC
R:
CTTTCCAACGGTCATGGTCTGA
Band lengths:
159-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]