HsaINT0043004 @ hg19
Intron Retention
Gene
ENSG00000168928 | CTRB2
Description
chymotrypsinogen B2 [Source:HGNC Symbol;Acc:2522]
Coordinates
chr16:75239640-75239890:-
Coord C1 exon
chr16:75239811-75239890
Coord A exon
chr16:75239719-75239810
Coord C2 exon
chr16:75239640-75239718
Length
92 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ACCCACAACGCTCTGCCCAGGAC
3' ss Score
3.54
Exon sequences
Seq C1 exon
GACAAAACCGGCTTCCACTTCTGCGGGGGCTCCCTCATCAGCGAGGACTGGGTGGTCACCGCTGCCCACTGCGGGGTCAG
Seq A exon
GTGAGGACCGGGCAGCCTTGGGCTCCGCTTCCAGCACCGGTCGGGTGGGAGGGGAGCAGGGCATGTTCTCTCACCCACAACGCTCTGCCCAG
Seq C2 exon
GACCTCCGACGTGGTCGTGGCTGGGGAGTTTGACCAGGGCTCTGACGAGGAGAACATCCAGGTCCTGAAGATCGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168928-CTRB2:NM_001025200:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(22.8=96.3)
A:
NA
C2:
PF0008921=Trypsin=PU(15.9=95.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAAAACCGGCTTCCACTTC
R:
CTTGGCGATCTTCAGGACCTG
Band lengths:
159-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)