BtaINT0045198 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008500 | CTRB1
Description
Bos taurus chymotrypsinogen B1 (CTRB1), mRNA. [Source:RefSeq mRNA;Acc:NM_001105330]
Coordinates
chr18:2592890-2593149:-
Coord C1 exon
chr18:2593070-2593149
Coord A exon
chr18:2592969-2593069
Coord C2 exon
chr18:2592890-2592968
Length
101 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGG
5' ss Score
5.78
3' ss Seq
CCACCACCTGATTCCCCCAGAAC
3' ss Score
6.43
Exon sequences
Seq C1 exon
GACAGCACCGGCTTCCACTTCTGCGGGGGCTCCCTCATCAGTGAGGACTGGGTGGTCACCGCCGCCCACTGCGGGGTCAC
Seq A exon
GTGAGGACCAGAGCTCGGGGTTCCGCTTCCGGCTTCGGCCTGGGGTGGGGGAGGGGAGCAGGGCACAAGCTCAGTCCTTAACCACCACCTGATTCCCCCAG
Seq C2 exon
AACCTCTGACGTGGTTGTGGCCGGGGAGTTTGATCAGGGCTTACAGACCGAGGACACCCAGGTCCTGAAGATTGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008500:ENSBTAT00000011204:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(11.7=100)
A:
NA
C2:
PF0008921=Trypsin=FE(11.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCGGCTTCCACTTCTG
R:
TTGCCAATCTTCAGGACCTGG
Band lengths:
154-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development