DreINT0054114 @ danRer10
Intron Retention
Gene
ENSDARG00000053966 | cyp17a2
Description
cytochrome P450, family 17, subfamily A, polypeptide 2 [Source:ZFIN;Acc:ZDB-GENE-100822-1]
Coordinates
chr23:45828511-45830364:-
Coord C1 exon
chr23:45830135-45830364
Coord A exon
chr23:45828598-45830134
Coord C2 exon
chr23:45828511-45828597
Length
1537 bp
Sequences
Splice sites
5' ss Seq
AGAGTCAGT
5' ss Score
-0.66
3' ss Seq
ATATTCTGACCTTTGATCAGATT
3' ss Score
5.57
Exon sequences
Seq C1 exon
TGCAGGAGGCGGCTGACAGTCTGTGTGAGGAGCTCCAGGCCTGCAGGGGTCAGAGTTCAGATCTGAGTGTGGTGTTGATGCGCGCCGTCACTAACGTGATCTGCAGGCTGGTGTTCAGCTCCTCCTATCAGCCCAGCGACCCCGAGCTGCAGACCGTCATACAGTACAACGACGGCATCGTGCAGACCATCGCCAGAGGGGGACTCGTGGACATCTTCCCCTGGTTAAGA
Seq A exon
GTCAGTAGCTCCGCTCAGATCACCGCTGCTCATTATCAGCTGATAGATTTAGAAAATAGATTTATACACAGACGTGGACAAAATTGTTGGCGTCTTAATTCTTTCCAGGTCGGCTTCAGTAGTTTGTCTTTTTTAACGCTTCTGTTGAACCACAGTTCGAAAGCAATGTCTGATTTACATTGCCTTATCTTCAGTAATTATTCATTAATCAGTCTCTTCAGTTTCTTGCTATTTTAGTAACCACTGTAGTTTCTCCTTCTTCAACAGAAGAGTGCCAACAGTTTTGTCCATGTCTGTATATACACTTTATTAGGTACACCACACTAGTACCGGGTCGAACCTCTTTTGCCTTCAGAACTGCTTTAATCCTTCATGGCAGAGATTCAGCAAGCTACTGGAAATATTCCTCAGAGATTTTGCTCCATATTGTCATGATAGCATCACACAGTTGCTGCAGATTTGTCGGCTGCACATCCATGATGCCAATCTCCCGTTCCACCACATCCCAAAGCTGCTCTATTGGATTGAGCTCTGGTGACTGTGGAGGCCATTTGAGTACAGTGAACTCATCGTCATGTTCAAGAAACCAGTCTGAGATGATTGAGCTTTATGACATGCTGCGTTATCCTGCTGGAAGTAGCCATCAGAAGATGGAGACACTGTGCTCATAAAGGGATGGACATGGTCAGCAGCAATACTCAGGTAGGCTGTGGCGTTGATGCTCAATTGGTACTAATGGACCCAAAGAAAATCTCCCCCACACCATTACACCACCACCACCAGCCTGAACCGCTGATACAAGGCAGGATGATCCATGCTTTCATGCTGTTGAGGCCAAATTGTGAGCCGAGCATCCGAATGTGTGAGCAGAAATGGAGACTCATCAGAGCAGCAACGTTTCTCCAATCTTCTATTGTCCAGTTTTGGTGAGTCTGTGTGAATTGTAGCCTCAGTTTCCTGTTCTTAGCTGACAGGAGCGGCACCCGGTGTGCTCTTCTGCTGCTGTAGCCCATCCGCCTCAAGGTTGGCCGTGTTGTGTGTTCAGAGATGCTCTTCTGCAGAGCTCGGTTGTAACGAGTGCTTATTTGAGTTACTGTTGCCTTTCTATCAGCTGGAACCAGTCTGGCCATTCTCCTCTGACCTCATCAACAAGGCATTTGCGCCCACAGAACTGCCGCTCACTGGATATTTCCTCTTTAATCTCTGTAAACCCTAGAGATGGTTGTGCGTGAAAATCCCAGTAGATCAGCAGTTTCTGAAATACTCAGAGCAGCCCGTCTGGCAGCAACAACCATGTTACGATCAAAGTCTCTTAAATCCCCTTTCTTCCCCATTCTGATGCTCGCTTTGAACTGCAGCAGATCCTCTTGAGCATGTCTACATGCCGAAATGCAGTGAGCTGCTGCCCTGTGATTGGCTGATTAGAAATCTGCGTTAACGAGCAGTTGGACAGGTGTACCTAATAAAGTGGCCAGAGAGTGTGTGTATATATTGAGTTTATACTGCATATTTATACAATATTCTGACCTTTGATCAG
Seq C2 exon
ATTTTCCCCAACAAGGACCTGAAGAGGCTAAAGGAGTGTGTTTCCATACGAGACCAACTACTGTACAAGAAACTGCTGGAGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053966:ENSDART00000076086:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(16.6=100)
A:
NA
C2:
PF0006717=p450=FE(6.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGGCGGCTGACAGTC
R:
GCTCCAGCAGTTTCTTGTACAGT
Band lengths:
310-1847
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]