GgaINT0044917 @ galGal4
Intron Retention
Gene
ENSGALG00000008121 | CYP17A1
Description
steroid 17-alpha-hydroxylase/17,20 lyase precursor [Source:RefSeq peptide;Acc:NP_001001901]
Coordinates
chr6:22926253-22926678:-
Coord C1 exon
chr6:22926449-22926678
Coord A exon
chr6:22926340-22926448
Coord C2 exon
chr6:22926253-22926339
Length
109 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ACAGGTCTTTTCTCCCCCAGATC
3' ss Score
10.05
Exon sequences
Seq C1 exon
TCTGCCGGGAGGCCGCATCCCTGTGTGAGACGCTGGGTGCTGCGCAGGATATGGCCCTAGACATGGCCCCGGAGCTCACACGGGCCGTCACCAATGTGGTCTGCTCCCTCTGCTTCAACTCCTCCTACCGACGCGGGGACCCCGAGTTCGAGGCCATGCTGGAGTACAGCCAGGGCATTGTGGACACCGTGGCCAAGGAGAGCCTGGTGGACATCTTCCCCTGGCTACAG
Seq A exon
GTGAGTGGGAACATAGCAACCACATGGGCCTCTTGCTTTTGGAATAGAAGAAGGGGGTGGAATGCATCCCACAAGAGCTTTTTGCTGCAACAGGTCTTTTCTCCCCCAG
Seq C2 exon
ATCTTCCCCAACAGGGACTTGGCTCTGCTGAAGCGATGCCTGAAGGTCAGGGACCAGCTGCTCCAGCAGAAGTTCACTGAACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008121:ENSGALT00000033172:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(16.4=100)
A:
NA
C2:
PF0006717=p450=FE(6.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCCTGTGTGAGACGCTG
R:
CATCGCTTCAGCAGAGCCAAG
Band lengths:
253-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]