GgaINT0044917 @ galGal3
Intron Retention
Gene
ENSGALG00000008121 | F1NYI7_CHICK
Description
NA
Coordinates
chr6:24819344-24819775:-
Coord C1 exon
chr6:24819540-24819775
Coord A exon
chr6:24819431-24819539
Coord C2 exon
chr6:24819344-24819430
Length
109 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ACAGGTCTTTTCTCCCCCAGATC
3' ss Score
10.05
Exon sequences
Seq C1 exon
CCAAAGTCTGCCGGGAGGCCGCATCCCTGTGTGAGACGCTGGGTGCTGCGCAGGATATGGCCCTAGACATGGCCCCGGAGCTCACACGGGCCGTCACCAATGTGGTCTGCTCCCTCTGCTTCAACTCCTCCTACCGACGCGGGGACCCCGAGTTCGAGGCCATGCTGGAGTACAGCCAGGGCATTGTGGACACCGTGGCCAAGGAGAGCCTGGTGGACATCTTCCCCTGGCTACAG
Seq A exon
GTGAGTGGGAACATAGCAACCACATGGGCCTCTTGCTTTTGGAATAGAAGAAGGGGGTGGAATGCATCCCACAAGAGCTTTTTGCTGCAACAGGTCTTTTCTCCCCCAG
Seq C2 exon
ATCTTCCCCAACAGGGACTTGGCTCTGCTGAAGCGATGCCTGAAGGTCAGGGACCAGCTGCTCCAGCAGAAGTTCACTGAACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008121:ENSGALT00000013182:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(16.7=100)
A:
NA
C2:
PF0006717=p450=FE(6.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCCTGTGTGAGACGCTG
R:
CATCGCTTCAGCAGAGCCAAG
Band lengths:
253-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]