DreINT0054118 @ danRer10
Intron Retention
Gene
ENSDARG00000053966 | cyp17a2
Description
cytochrome P450, family 17, subfamily A, polypeptide 2 [Source:ZFIN;Acc:ZDB-GENE-100822-1]
Coordinates
chr23:45825339-45825873:-
Coord C1 exon
chr23:45825770-45825873
Coord A exon
chr23:45825584-45825769
Coord C2 exon
chr23:45825339-45825583
Length
186 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
GTGTGTGTGTGTGTCCACAGAGC
3' ss Score
11.54
Exon sequences
Seq C1 exon
TTTGGGGGGTCACAGTGTTCCTAAAGGGACGCGTGTTCTGGTGAACATGTGGGCGATTCATCACGACCCCAAACACTGGGACCAGCCTGAGCAGTTTAACCCTG
Seq A exon
GTAAGAAAACCCTGCACTCTGCATTTACTATAGTGAACTAAAGACTAACAACAGACAGAACACACAGTGGACATTATAATGTCGTCTGAACTCTATCAGAGATGTTTAGCTAAGGTTTGGGGTCAGTGTTAGTAATGTCCAGCTGCAGATGATTGTGTGTGTGTGTGTGTGTGTGTGTGTCCACAG
Seq C2 exon
AGCGCTTCCTGGAGCCATCAGGGAAGAAGAAGACTCAGTCCAGCTTCCTGCCGTTCGGTGCGGGTCCGCGGGTGTGTGTTGGAGAATCTCTAGCCAGAATTGAGCTCTTTCTGTTTGTCTCTCGCCTCCTGCAGCGCTTCAGCTTCAGCTGTCCATCAGAGGCTTCATTGCCGGATCTGCAGGGCCGCTTCGGGGTGGTGTTACAGCCTGAGCGCTACACGGTCACAGTCACACCTCGACACTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053966:ENSDART00000076086:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=NA C2=0.099
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(7.7=100)
A:
NA
C2:
PF0006717=p450=PD(16.6=92.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCTAAAGGGACGCGTGTT
R:
AGCCTCTGATGGACAGCTGAA
Band lengths:
252-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]