RnoINT0044161 @ rn6
Intron Retention
Gene
ENSRNOG00000020035 | Cyp17a1
Description
cytochrome P450, family 17, subfamily a, polypeptide 1 [Source:RGD Symbol;Acc:2456]
Coordinates
chr1:266422132-266423098:-
Coord C1 exon
chr1:266422995-266423098
Coord A exon
chr1:266422593-266422994
Coord C2 exon
chr1:266422132-266422592
Length
402 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
ACACTTCCCTTTTTCTGTAGAAC
3' ss Score
9.53
Exon sequences
Seq C1 exon
CATTGGAGAGTTTACTGTCCCCAAGGACACACATGTGGTCGTCAATCTCTGGGCACTGCATCACGATGAGAATGAATGGGACCAGCCAGATCAGTTCATGCCTG
Seq A exon
GTGAGTCCTCCTCTGCCCCATACTGACCCCTGGGCCACACAGCCAGCCTGGATTCTGCTCTTCCGGGGCAGCGCTCCTTCCTGACCACTAAGCTTGCTACTAGAAACCTCTTGGCTGCAACCCCATAGGCCTGTCACCATTTCCATCCTACTGGAGATTGCCCCAGACTCTTCACAGATGGGGCTTTCAACTCTCTCTTCAAATAACCTCTGTGGGAAGTCTGCAGGCATCTGTCTCCCAAGAGGCCTGTCCCTCTTCTCCTGGATGGGGCATTTTTCCCTGGGGACTCCTCTTCCTCCCTCGACATCCTTCCTGAATATTTGCTTCCTCATGCCCTAAAAGCAGGTCGAGCTTCCCTGGCCAAAAGCTTGGCCCCTGGCTGACACTTCCCTTTTTCTGTAG
Seq C2 exon
AACGCTTCTTAGATCCAACGGGAAGCCATCTCATTACACCCACGCAGAGTTACTTGCCCTTCGGAGCTGGTCCCCGATCCTGCATCGGAGAGGCTCTGGCCCGTCAGGAGCTCTTTGTCTTCACGGCCTTGCTACTGCAGAGGTTTGACTTGGATGTGTCAGATGATAAACAACTGCCCCGCCTGGAGGGTGATCCCAAGGTAGTCTTTCTGATCGACCCTTTCAAAGTAAAGATCACGGTGCGCCAGGCATGGATGGATGCACAGGCTGAGGTTAGCACCTAGAGGCCACAACTAACATCCCCGATCCATACCTCAACACCCACAGTACAATCTTAGAGGTGCTAGTCCCAGTGCCTCCTACGGTCCTCCTCCCTCCTACCCCATTTTCTAGTTGGCAGCAATGGGGGGTGATACACATAAATTAAAGTTTTTTCAATAAACATCTCTGAGCCGCCTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020035:ENSRNOT00000027160:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.139 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(7.5=100)
A:
NA
C2:
PF0006717=p450=PD(16.8=82.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGTCAATCTCTGGGCACTG
R:
CTAACCTCAGCCTGTGCATCC
Band lengths:
344-746
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]