DreINT0054110 @ danRer10
Intron Retention
Gene
ENSDARG00000033566 | cyp17a1
Description
cytochrome P450, family 17, subfamily A, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-040213-2]
Coordinates
chr13:28470745-28472119:-
Coord C1 exon
chr13:28472016-28472119
Coord A exon
chr13:28471927-28472015
Coord C2 exon
chr13:28470745-28471926
Length
89 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGAATCCTCTAATCTGACAGGAC
3' ss Score
6.5
Exon sequences
Seq C1 exon
TGTTGGTGAATACACAGTGCAGAAAGGGACGCGGGTCGTTATTAACCTCTGGTCTTTACATCATGATGAGAAGGAATGGAAGAACCCTGAGCTCTTTGACCCAG
Seq A exon
GTGAGGATCTGCTATGATGAAAGCCGGTTGTCTCTCGCTGTCTCTCGCTTTGAACATTATCAGTAACAGTGAATCCTCTAATCTGACAG
Seq C2 exon
GACGCTTTCTGAATGAGGAGGGTGATGGTTTGTGCTGCCCGTCGGGCAGTTATCTGCCATTCGGCGCAGGGGTGCGTGTTTGTCTCGGCGAGGCCCTGGCAAAGATGGAGCTCTTTCTCTTCCTGGCGTGGATTTTGCAAAGGTTTACTCTGGAGATGCCCACTGGCCAGCCTCTGCCTGACCTCCAGGGCAAGTTTGGCGTGGTTCTTCAACCCAAGAAATTCAAGGTTGTTGCTAAAGTAAGAGCAGACTGGGAGAAATCCCCACTCATGCAGCACTGCTGAGCTTAATGTCAGATGCTGAAATCTTAATCTAATGAGAATCTTTTTCTCAGCTTCCTCTGTGTAGATTGTGTATTTTCACTTTTATGGCAGAACGTTGGTTCTTTTTATCAAATTTAGAGTGAAATAAACATAATGCTGAGGAAATATTCTCTTTTAGAAGATCATTTCAGACGGCGCTCAGTCAAATAGCACACATCAAACATAAATTCAAAGAAGGATTTTGAACAGTCAGAATATGGAGGGAACACATTTATTCATATAAGCTGATTATTAATGATGGTTTATTGACTGTTAAAGAGCAACAAGGGTGTTATTGATGGCATGTGTTTTTGTTGAAGCCACCAGGCCATATTATTGTAACAGTGTTTAAAATAGACAAATTTAACTCTTTATACAGCACTCATTGAAAAACAAACCTGGATTGTTATTTGGGGATGTGACTTACAAGAACTTTTTAGATTTTTTATGAGAAATAGAATAGTGAGTGATATTGAAATCATTGTCAGTGAAGTTACCATATATGATTCTTCACCTAATAAAAGGTTACCCAGATAGTTTACCCAAAATGTAAAATTTACTCACTATTTACTCTCCTTGAAGTGTTTTTTTTTCTTCTGTTAAACACAAAAGAAGATAATTTGAAGAATGCTGAAAACCTGTAACCATTGACTTAATTGTAGGAAAAACAGGTTTCCAGCTTTTTTTCCCAAAGCATCTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAGTCAAGTGCTCAATCTTTTTATGTTGGTCTTGGTTTTCAACTGGTTGCACTGTTCTAAAACAATGTCTATGTGTTGCAAGTGTTTATAATCATATTTCTAACGGGAAGTTGTTTGGACGAAATTAATAAATGTGACGTGATTCGCTACTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033566:ENSDART00000043156:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(7.5=100)
A:
NA
C2:
PF0006717=p450=PD(16.8=82.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCCTGAGCTCTTTGACCCA
R:
AACCTTTGCAAAATCCACGCC
Band lengths:
167-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]