GgaINT0044921 @ galGal3
Intron Retention
Gene
ENSGALG00000008121 | F1NYI7_CHICK
Description
NA
Coordinates
chr6:24817997-24818592:-
Coord C1 exon
chr6:24818489-24818592
Coord A exon
chr6:24818377-24818488
Coord C2 exon
chr6:24817997-24818376
Length
112 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
GGTGCCCCTTCCCCTTGCAGGCC
3' ss Score
11.99
Exon sequences
Seq C1 exon
CATCGGTGAGTACTCCATCCCCAAGGGCGCCAGGGTGGTCATCAACCTCTGGTCCGTGCACCACGATGAGAAGGAGTGGGATAAACCTGAGGAGTTCAACCCTG
Seq A exon
GTGAGTTGTGAGTTCCCAGCCCAGTGCCCAGGCTGGAGGGATGATGAATTGGGGCAGGTCTCAGACAGAAGAGAAGGATCCCCATCCCCAGCGGTGCCCCTTCCCCTTGCAG
Seq C2 exon
GCCGCTTCCTGGATGAGCAGGGCCAGCACATCCACTCACCCTCTCCCAGCTACCTGCCCTTTGGGGCCGGCATCCGCGTGTGCCTGGGTGAAGTCCTGGCCAAGATGGAGCTCTTCCTCTTCCTGGCCTGGGTGCTGCAGAGATTCACGCTCGAGTGTCCGCAGGATCAGCCCCTGCCCTCGCTGGAGGGCAAGTTTGGCGTTGTGCTGCAGGTGCAGAAGTTTCGGGTGAAGGCCAGGCTGAGGGAGGCCTGGAGGGGCGAGATGGTGAGGTGAGGTGGGGTTGTTGGATAGGTGGAATGGGGTGGGTGGATGCCGTAGAGACTGCGCTCTGCCTGCCTCATGGATGTGAGATTGTCTGAATAAAGCTGTCCCCAACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008121:ENSGALT00000013182:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=NA C2=0.044
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(7.5=100)
A:
NA
C2:
PF0006717=p450=PD(16.7=84.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGAGTACTCCATCCCCAA
R:
CTCGAGCGTGAATCTCTGCAG
Band lengths:
256-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]