DreINT0054247 @ danRer10
Intron Retention
Gene
ENSDARG00000098995 | cyp2k6
Description
cytochrome P450, family 2, subfamily K, polypeptide 6 [Source:ZFIN;Acc:ZDB-GENE-040426-1571]
Coordinates
chr3:12669854-12670246:+
Coord C1 exon
chr3:12669854-12670003
Coord A exon
chr3:12670004-12670085
Coord C2 exon
chr3:12670086-12670246
Length
82 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TCTTGCTTACTCTTGTGCAGGAA
3' ss Score
9.14
Exon sequences
Seq C1 exon
GCATTGCGTTTTCCAATGGTGAAAACTGGAGAGAAATGAGACGCTTTGCTCTGTCCACCCTACGAGACTTTGGAATGGGCAGAAAGAGAAGCGAAGAGCTGATCATTGAAGAGATTAAATATGTAAAGGAGGAATTTGAGAAGTTTGGAG
Seq A exon
GTAAGACTGTCAACCTTGAGGACAAGATGATGACGTGACTTTAAATGATTTGAGTATTTACATCTTGCTTACTCTTGTGCAG
Seq C2 exon
GAAACCCATTTGAAACAAAACTGCCCTTAGCCTTGGCCATTTCGAACATCATCGCTTCAATTGTCTTCAGCGTCAGATTTGAGTACAGCAACACTAAGTTACATCGCATGGTCGGACGGGCTTATGAAAACATGAAGTTGACTGGATCTCCTTCTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098995:ENSDART00000170788:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.9=100)
A:
NA
C2:
PF0006717=p450=FE(11.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGACGCTTTGCTCTGTCC
R:
GCGATGATGTTCGAAATGGCC
Band lengths:
170-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]