DreINT0054277 @ danRer10
Intron Retention
Gene
ENSDARG00000042980 | cyp2p7
Description
cytochrome P450, family 2, subfamily P, polypeptide 7 [Source:ZFIN;Acc:ZDB-GENE-041001-155]
Coordinates
chr20:25673601-25674016:+
Coord C1 exon
chr20:25673601-25673788
Coord A exon
chr20:25673789-25673874
Coord C2 exon
chr20:25673875-25674016
Length
86 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
AACCTTTTGTTGTTCTTCAGGGC
3' ss Score
9.95
Exon sequences
Seq C1 exon
CTAAAGTTCAGCAGGAGATTGATGCTGTTGTTGGAGGCTCACGGCAGCCATCTGTATCAGACAGAGACAACATGCCCTACACCAATGCTGTCATTCATGAGATACAGAGGATGGGAAACATAGTCCCATTAAATGTGTTTCGAATTACTGTAGAAGATACTCAGATAGGAGAATACTCTATTCCAAAG
Seq A exon
GTGGGTCTGGTGTTTAAAGCACTCTTTATTTCTAGATTTTCTTCTACACATTTGTAGTTTTTATTAAACCTTTTGTTGTTCTTCAG
Seq C2 exon
GGCACTCTTGTGATTGGCAGTTTGACATCAGTGCTGTTTGATGAGTCTGAGTGGGAGACGCCTCACTCTTTTAACCCGGGTCACTTCCTGGACGCTGAGGGCAAATTCAGGAGGAGAGATGCCTTTTTACCTTTTTCTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042980:ENSDART00000063107:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.6=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCAGCCATCTGTATCAGAC
R:
ACTGCCAATCACAAGAGTGCC
Band lengths:
168-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]