RnoINT0044347 @ rn6
Intron Retention
Gene
ENSRNOG00000008988 | Cyp2d2
Description
cytochrome P450, family 2, subfamily d, polypeptide 2 [Source:RGD Symbol;Acc:2471]
Coordinates
chr7:123652177-123652836:-
Coord C1 exon
chr7:123652649-123652836
Coord A exon
chr7:123652319-123652648
Coord C2 exon
chr7:123652177-123652318
Length
330 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
ACCATATGCCCTCTTACCAGGGG
3' ss Score
8.21
Exon sequences
Seq C1 exon
GCCGAGTCCACGAGGAGATTGATGAGGTCATAGGGCAGGTGCGTCGTCCAGAGATGGCAGACCAGGCACGAATGCCGTTCACCAATGCTGTCATCCATGAGGTGCAGCGCTTTGCAGACATCGTCCCGACAAATATACCACATATGACATCCCGAGACATTAAATTCCAAGGCTTCCTCATCCCCAAG
Seq A exon
GTAGGCATACACACTCTGTTCCCAGAATCCACAATACGCAAACAAGGGAATGGAATCAACCTGGGTGTGAGTACATTGGAGCCATTACCCAAGATCCCCTGGAGAAGAGGACATCCAGTGAAATGAGCTGTAGGGGTGGTAGGAAGAGCTGCAGATAGGAGCTTTGTAACAAGGGTTTGAATGGACCAGAGAAGGTTCTGGGAGGCTCTGGGTTTGAGGTTTAATAAAAGGATCCAGTGTGTAAGGTAGAGACAATGCATGAGAACTTGGTGGCCAGTGTCTAGGCAGCTCCAACCCAGTCCATTTTCACACCATATGCCCTCTTACCAG
Seq C2 exon
GGGACAACCCTCATCCCCAACCTGTCCTCCGTGCTGAAGGATGAGACCGTCTGGGAGAAGCCCCTCCGCTTCCATCCAGAACACTTCCTGGATGCCCAGGGCAACTTTGTGAAGCATGAGGCCTTCATGCCATTCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008988:ENSRNOT00000012413:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.4=100)
A:
NA
C2:
PF0006717=p450=FE(10.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGTCCACGAGGAGATTGA
R:
TGCTGAGAATGGCATGAAGGC
Band lengths:
328-658
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]