DreINT0054267 @ danRer10
Intron Retention
Gene
ENSDARG00000042990 | cyp2p10
Description
cytochrome P450, family 2, subfamily P, polypeptide 10 [Source:ZFIN;Acc:ZDB-GENE-040120-1]
Coordinates
chr20:25692579-25694156:+
Coord C1 exon
chr20:25692579-25692766
Coord A exon
chr20:25692767-25694014
Coord C2 exon
chr20:25694015-25694156
Length
1248 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
3' ss Seq
AGCATCTTGTTGTTCTTCAGGGC
3' ss Score
8.6
Exon sequences
Seq C1 exon
CTAAAGTTCAGCAGGAGATTGATGCCGTTGTTGGAAGCTCACGGCAGCCATCTGGATCAGACAGAGACAACATGCCCTACACCAATGCTGTCATTCATGAGATACAAAGGATGGGAAACATTATCCCATTAAATGTGGTCAGGACTACTTCGGAAGATACTCGGATAGAAAAATACTCCATTCCAAAG
Seq A exon
GTGGGACACATCACAGTTATTGAGTAGTATGTGCTTTTCCTTCCGCAGAACGTTAATGAAGCGTTCCCTTACATAAAATCACTGCAGTTTTTTTAAATGAATACTGCAGTTTTAGTTAACTTTTGAAAAGTTCAGGTTTTGTTTGGAGTTTGCATGTTCTCCCCGTGTTTGCGTGGGTTTCCTCTGAGTCCTCCGGTTTCCCCCACAAGTCCAAAGACATGCGGTACAGGTAAATTGGGTATGCTAAAAATGACCATAGTGTTTGAGTGTGTGTTTGAGTGAGTGTGGATGTTTCCTAGTAATGGGTTGCGGCTGAAAGGGCATCCGCTGCATGAAACATAAGCTGTATAAGCAAGCGGTTGATTGCACTGTAGCGACCCCAGATTAATAATAATGGGTCTATGCTGACAAAAAATTGAATGAATGAATAAATGAATGAACATACTACTATATTGCCCCTCTCAGTTTATTTAATGTTACTTCAGTTGTACTGCAGATTTTACTGTTGTTGAACTATATTACATTGTACTGTGTTTATACCTCATTATACTTCAATTTTTCAGTTGCATTGAATTAAGGCTACTGCTGTTGTACTTTTCAGTTCACTGCAGTTATTTTTTATTATTTGTTATTGCAAATAAACTATTAAAATTTTAATTAGAAAATTACTTGAATCTAGAAAAACAGAGGACTAAATATTCTCGAAAGATATTGAAGAGCAAACCCTTTGGAACACAAGTGCAGTACAGTTCTTACCACACCATTGGCATATTAGACTACAGCAGCACAAGTGCAGTAAAAATGGAGTTTACTTCTTTTTACTTCAGGTTACTGCAACTTATACTGCTGCTGAGCTTCATTGTACTATATTTAAACTGTGTTTATACTTCATTGTATTACAATTTTGCAATTGTACCTAATTTTACTGCAGTTCTACTTCTATATACTGCTGTAGTACTGCTGTTTTGCTTCAGTTTACTGCAGTTATTTTTGTAAGGGTTGCTCTTTGGTGATTCATTAAATACTGGTCAACAACTTCTGGCACTTTGATTTACAACATTATTACCTTTAATCAGCGGCTTTCACAATGTTTGCTCTGAAGCACAAACTTTAGTTTTATGAATCACCAAGGACAGGCTTCATTTAAAAATCTTCTTTAATTTTCTACTGTAAATCACATGTAGGTTGGCCTGGAATGGATGGCCTTTTTGGCTGAACTGTCATTTTAAGCATCTTGTTGTTCTTCAG
Seq C2 exon
GGCACTCTTGTGATTGGCAGTTTGACATCAGTGCTGTTTGATGAGTCTGAGTGGGAGACGCCTCACTCTTTTAACCCGGGTCACTTTCTGGATGCTGAGGGCAAATTCAGGAGGAGAGATGCCTTTTTACCTTTTTCTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042990:ENSDART00000134047:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.254 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.6=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCAGCAGGAGATTGATGCC
R:
CTAGAGAAAAAGGTAAAAAGGCATCT
Band lengths:
326-1574
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]