HsaINT0044218 @ hg19
Intron Retention
Gene
ENSG00000198077 | CYP2A6
Description
cytochrome P450, family 2, subfamily A, polypeptide 7 [Source:HGNC Symbol;Acc:2611]
Coordinates
chr19:41350536-41351386:-
Coord C1 exon
chr19:41351199-41351386
Coord A exon
chr19:41350678-41351198
Coord C2 exon
chr19:41350536-41350677
Length
521 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCTA
5' ss Score
2.48
3' ss Seq
AACTTCCTCCTCCCTACCAGGGC
3' ss Score
8.08
Exon sequences
Seq C1 exon
CCAAGGTCCATGAGGAGATTGACAGAGTGATCGGCAAGAACCGGCAGCCCAAGTTTGAGGACCGGGCCAAGATGCCCTACATGGAGGCAGTGATCCACGAGATCCAAAGATTTGGAGACGTGATCCCCATGAGTTTGGCCCGCAGAGTCAAAAAGGACACCAAGTTTCGGGATTTCTTCCTCCCTAAG
Seq A exon
GTGCTATCCGCCCCCACCCCCCAGACTACGGGGACTTCCAGCCCCTCTCTGTGTCCCCAGCATCCCACCCACATTAGAAGCTTTCTAGACCCTGTCCCACTCCCTCAATCAGTCAAAAAAGACTTCCCCAACCACCACATCCGTTCCACCTTTCCACTTAGACACTCCTGAGTCCTGCATCTCTCCAGACTCTTTGTGTCAGGAGAATCAAACACATGTTCCCAAACTTCCTATCTTAAGAAACAGAAGCCCCCTTTCCATTCGGCCTTTTGTCATAGGGACAGAAATCTCAGGTCCCCCAAACTCCTGCCTAGAAGGACATGGACCCCATGTCTCCCAAACTTCCTGTTTCAGAGATGTGAACCTTCTATCCCCCAAAGCTCCTCCATCAGAGGACCCCAACTCCTCCATGCCTGCCACTTCCCCTTACCTGGGGCACACTAGTTCCCCCTCCAGCCCCTGTGTACTTTCACCAATCCCCCGACCCTCCTCATCACACACAACTTCCTCCTCCCTACCAG
Seq C2 exon
GGCACCGAAGTGTTCCCTATGCTGGGCTCTGTGCTGAGAGACCCCAGTTTCTTCTCCAACCCCCAGGACTTCAATCCCCAGCACTTCCTGAATGAGAAGGGGCAGTTTAAGAAGAGTGATGCTTTTGTGCCCTTTTCCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198077-CYP2A6:NM_000762:7
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.042
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGGTCCATGAGGAGATTGAC
R:
CGATGGAAAAGGGCACAAAAGC
Band lengths:
330-851
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)