MmuINT0044756 @ mm9
Intron Retention
Gene
ENSMUSG00000060407 | Cyp2a12
Description
cytochrome P450, family 2, subfamily a, polypeptide 12 [Source:MGI Symbol;Acc:MGI:105055]
Coordinates
chr7:27819630-27820471:+
Coord C1 exon
chr7:27819630-27819817
Coord A exon
chr7:27819818-27820329
Coord C2 exon
chr7:27820330-27820471
Length
512 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
CTCCATCTTCTCTCTTCCAGGGC
3' ss Score
11.81
Exon sequences
Seq C1 exon
CCAAGGTCCATGAGGAGATTGACCGAGTGATTGGCAGGAACCGACAGCCCCAATATGAGGACCATATGAAGATGCCCTACACCCAGGCTGTGATCAATGAGATCCAGAGATTTTCTAACTTTGCTCCCTTGGGCATTCCTCGAAGGATTACCAAGGATACTTCCTTCCGTGGCTTCTTCCTCCCCAAG
Seq A exon
GTACAGCCATGGACATCAGGAGGGGCCTTCAGCCCACTTCCTGATGCCTCAGGGCCCCTTTCCATCTACAGCTATCTAACTCCACTCTATTCCCCCAACTACTATGTCAGCCTCACCAGGGTCCTCTGATTAGATAGATTATTGTCACCTTTCCTAGACTTAGTGTCTCTGGAGATTTATCCACATGTCTCCAACTTCTTGTCTCATTGCTTTGAACTCCAAGTTCTATCTGCTCCTCTGCCTTGATGCCTTCCAATATCTCAACTCCTGGGCTGGAGACAAAGGCCTGGTGTCACTCTAGCAGCCTGTCTCAGAACATGAACCCATGGAGCTCAAATCTCCTACTCCTGGTGGCACACATCACATCACCTCAAAACTCATACTCCCTAATATCCCTTACTCAGGAGACCACCAACTCTGTGCCTTTCAGATCTCTTCATTTAGACCCTAACACCTTTTGTGATCCTTTCTCCATTTATCCATATTCTTAAACTCCATCTTCTCTCTTCCAG
Seq C2 exon
GGCACTGAAGTGTTTCCTATACTGGGTTCTCTGATGACAGACCCAAAGTTCTTCTCTAGCCCCAAAGACTTCAACCCACAGCACTTCCTGGATGACAAGGGACAGTTGAAGAAGATCCCTGCTTTTCTGCCCTTTTCCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060407-Cyp2a12:NM_133657:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.175 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.6=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCATGAGGAGATTGACCG
R:
CAGTGGAAAAGGGCAGAAAAGC
Band lengths:
326-838
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: