BtaINT0010147 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3MYH2]
Coordinates
chr18:50417677-50418675:-
Coord C1 exon
chr18:50418488-50418675
Coord A exon
chr18:50417833-50418487
Coord C2 exon
chr18:50417677-50417832
Length
655 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCTG
5' ss Score
4.05
3' ss Seq
CCCTCCCTCCTCTCAACCAGGGC
3' ss Score
9.58
Exon sequences
Seq C1 exon
CCAAAATCCATGAGGAGATTGACCGCGTGATCGGCAAGAACCGTCAGCCCAAGTTTGAGGACCGAGCCAAGATGCCCTACACAGAGGCTGTGATCCACGAGATCCAGAGATTCGGAGACATGATCCCCATGGGCTTGGCTCGCAGAGTCACCAAGGATACCAAGTTTCGAGACTTCCTGCTCCCCAAG
Seq A exon
GTGCTGCCCCACTCAGCCCGCTCCCTGTGACCCTAAACCCCATTCCCCTTAGAACCTTCCCAGCCCATGACCCACGGGACCCACTCCCCTAATCAAAGACTTTCCCCACTACCGTGTCCCTGCCACCTTCCCCCTTGGAGACTCCTGAATTCCAGACCTCCCCAAGACCTCTTACCTCAAGGAATATGAACCCTATGTGCCTCCCAAATTTCTGTCTCAAGGGAAATGAACCTCATTTCCCCTAGACCTTCAAGGACATGATCTCATGTCCCCCAAGCATCCTGCCTAGAGGGACACGAACCCCACGTCTCCCAAAATTCCTTTCTCAGGGAACATGACCTTCCCACCCCCTCAACCTCCTGCCATGGGAGGCATTAACTATGTGTCCCCGAAACCATCTGCTCCAGGAGACACAGAACCCGTGCTTTTCAAACTTCCCTTCTCAGGGGACATAAGCCCCATGTCAGCCAAACTTCCTGTCTCCGAGGACATGAATCTCGTGTACCCCAAAGCACCTCCTTCAGAGGACCCCAACTCCCATGCCTTCCCTTGTCCTGACCTCGGACACCCAAATTCCCCCTCTGCCCACAATGTGCTTTCGTCATACCCATCCCCTACTCCACCTTATCAAAGTCCCCTCCCTCCTCTCAACCAG
Seq C2 exon
GGCACCGAAGTGTTCCCTATGCTGGGCTCTGTGCTGAGAGACCCCAAGTTCTTCTCCAACCCCCGAGATTTCAATCCCCAGCACTTCCTGGACGAGAAGGGGCAATTTAAGAAGAGTGATGCTTTTGTGCCCTTCTCCATCGGTAAGAGACACTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047815:ENSBTAT00000065779:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.038
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(15.3=100)
A:
NA
C2:
PF0006717=p450=FE(12.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGAGGAGATTGACCGCGTG
R:
GCAGTGTCTCTTACCGATGGA
Band lengths:
336-991
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development