MmuINT0044780 @ mm9
Intron Retention
Gene
ENSMUSG00000005547 | Cyp2a5
Description
cytochrome P450, family 2, subfamily a, polypeptide 5 [Source:MGI Symbol;Acc:MGI:88597]
Coordinates
chr7:27625956-27626888:+
Coord C1 exon
chr7:27625956-27626143
Coord A exon
chr7:27626144-27626746
Coord C2 exon
chr7:27626747-27626888
Length
603 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCTG
5' ss Score
4.05
3' ss Seq
AGTCGTTTTATCATCAACAGGGT
3' ss Score
6.81
Exon sequences
Seq C1 exon
CCAAGGTCCATGAGGAGATTGATCGGGTGATTGGCAGGAACCGGCAGCCCAAGTATGAGGACCGAATGAAGATGCCCTATACGGAGGCTGTAATCCATGAGATCCAGAGATTTGCAGACATGATCCCCATGGGCCTGGCTCGAAGGGTCACCAAGGACACCAAGTTTCGAGATTTCCTCCTCCCCAAG
Seq A exon
GTGCTGATTCACCCAGCCTAGAGTGACCTCTAGCCCTCTTCATGGGCCTCTAGGACCTTCTCCTCATTAGAGTCCACCCAGACCCTCTCTCGGTTCCTCAGTGACAGATTTTCTCTGCCACCACACCCCACTGCCCTCTTACTTAAAACTCCTATATCTTGGCTTTTCTCTGAGACTTTCCCACCCAGGAATTTTAACTCCATGCCTCTCAAGATGTATAAGCTTAATTGATCAAGATCTTGACTGTGTTAGAGACAGGAGACTCATGTCTGCCATATATCCGGTTTAGGGCTACATAAATTCAATACCCCTCAAATCTTGACTTGAGAGACATGAATTGCATAGCTCTCAACCTCCCACCCCAGAAGACAGAGCCCATGTCACTCATTCATCCTGTCTAATAGAACATGAGCCCTACATCCCCCATATCTCCATCTCAAGAATAACCTCACATTCCTCAAAGCTCCTCCCTCAAAGCCCCCACAACTCACATATGTTATATTTATCATCACCTGGGATATCCTAGCTCACACTTCTAACCCCTGAAGGCCAGTAGGACACTCATCTAAATCTAACCTGATCAAGTCGTTTTATCATCAACAG
Seq C2 exon
GGTACTGAAGTGTTTCCTATGCTGGGCTCTGTGCTGAAAGACCCCAAGTTCTTCTCCAACCCCAAAGACTTCAACCCAAAGCACTTCCTAGATGACAAGGGACAGTTTAAGAAGAATGATGCCTTTGTGCCCTTTTCCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005547-Cyp2a5:NM_007812:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.5=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGGTCCATGAGGAGATTGA
R:
TGGAAAAGGGCACAAAGGCAT
Band lengths:
327-930
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: