GgaINT0015028 @ galGal3
Intron Retention
Gene
ENSGALG00000021238 | E1C495_CHICK
Description
NA
Coordinates
chr14:2263970-2264983:+
Coord C1 exon
chr14:2263970-2264154
Coord A exon
chr14:2264155-2264841
Coord C2 exon
chr14:2264842-2264983
Length
687 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
TTTCTTCTGTCTTCTCCCAGGGT
3' ss Score
11.91
Exon sequences
Seq C1 exon
AAAAGGTGCAGGAGGAGATTGGAAGAACTGTCAAAGCTGGAAGCTGGGTGACGTACGAGGACCGCAAGAACATGCCATTTACAAACGCGGTGATCCACGAAGTGCAGAGGTTCATCACCCTCCTGCCCCACGTTCCCCGCTGCACTGCTGTGGACACCCACTTCAGGGGATACTTCCTTCCCAAG
Seq A exon
GTGGGTACAGCCCAGCCCAGGGGCACACCATGCTCCTCTTGCTGCCAGTGGCACTACAGACCAGCTTCTTTAGAGGGAGCTGCGGGACAGAAACACAAAATATATGTCCAAAATTACCCCAGAAGAGTTCCTTCCTTTCCAGTGACTGTGCTGAGCCCAGAGAGACCAGTAATGTGGAATTCGATTCAGGCCCTCATGCTCAGCACTTCCACACTCCAAGAGTGACCCTGGTTTACCTCTGATGCCATCTGCCCAGTGAAGTATTTGCCAGGGAACGCGCAGGATCTGACCCTCTGCCTGAGATCCTCGCCATGCCATGTGGCATTTGGCTTCAGTCCTTGGCACAGCTGGGAAAATCTCACTGACCTCTCCCTGTTGGTGGAGGGGATAAAATCCTCAGGGTCTCCACCTGCCCCACTCGAAGCAAATCTCCCACAATAACAAATTAGTGTCACAAAATAAAGCAACACAGAGCAACAAGTCCTGCCCTCCTGCTCAGCCAAGAATCTTACTGGCAAAGCAACACTTAGCGTTGGAGTGAGATGTTTTGGTAAACCCATGATGGACAGGACTTCTCCAAGGAGCTCCTCCTCATCCCCACCCCCTTCCCCACCCCCCTCACCCGGGACCCTCGGTGCAGCACCACGGGTGCCCCTGGGCCTTGCTATTTCTTCTGTCTTCTCCCAG
Seq C2 exon
GGTATAATTGTCATCCCATCGCTCACCTCAGTGCTGCTGGATAAGACTCAGTGGGAGACACCACACCAGTTCAACCCCAACCACTTCCTTGATGCTGAAGGGAATTTTGTCAAGAGGGAGGCTTTCCTGCCCTTCTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021238:ENSGALT00000006237:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(14.1=100)
A:
NA
C2:
PF0006717=p450=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGTGCAGGAGGAGATTGG
R:
CTGTGGAGAAGGGCAGGAAAG
Band lengths:
326-1013
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]