HsaINT0044341 @ hg19
Intron Retention
Gene
ENSG00000073067 | CYP2W1
Description
cytochrome P450, family 2, subfamily W, polypeptide 1 [Source:HGNC Symbol;Acc:20243]
Coordinates
chr7:1026983-1028054:+
Coord C1 exon
chr7:1026983-1027167
Coord A exon
chr7:1027168-1027912
Coord C2 exon
chr7:1027913-1028054
Length
745 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
3' ss Seq
TGCCCCGGCTGCCCCCACAGGGC
3' ss Score
9.78
Exon sequences
Seq C1 exon
GCCGGGTGCAGGAGGAGCTAGACCGCGTGCTGGGCCCTGGGCGGACTCCCCGGCTGGAGGACCAGCAGGCTCTGCCCTACACAAGCGCCGTGCTCCACGAGGTGCAGCGGTTCATCACGCTCCTGCCGCACGTGCCCCGCTGCACCGCGGCCGACACACAGCTGGGCGGCTTCCTGCTCCCCAAG
Seq A exon
GTGGGGCTGGGCCTCCCTTGCCCCTTCCATCTCCTCTGGGGTAGGCCTCGGCGGGGGTCCAGGGGCACTGGGACGGCTGAGCGTCTGGTGGGTGCCTGATGGCCCAGCGCTCCCCGACCGGAGGCAATAAAGGGCGTCCAGCCAGGAGCAGGAGGGAGGCAGCCCTCTCACCCCACAGCCCAGCACTTGGCCTGGCCAGCAGACCTGGCGCCTCCCTGCATGTCCTGGGGTCCCCTCCGTGTGTCCTGTGGGCATCCCTGTCCATGTGTCCTAGGCGATCCCCTCGGTGTGTCCTGGGGGTCCCCTCTGTATCCTGGGGGGGTCCCCTCTGTGTGTCCTGGGGATCCCCTGTGTGTCCTGAGGGGTCCCCTCTGTGTGTCCTGGGGATCCCCTGTGTGTCCTGGGGGGGTCCCCTGTGTGTCCTGGGGGTCCCCTCTGTGTGTCCTGGGGGGGTCCCCTCTGTGTGTCCTGGGGGGTCCCCTCTGTGTGTCCTGGGGGTCCCCTCTGTGTGTCCTGGGGCGTCCCTCTCCATGCATCCTGGGTGTCCTCTCTATCCTTGGGGCCCCTGGCTGTGTGCCCTGGGGTCATGTGGCCTCCCTGGGTTTGGGTGCCTCACCTGCAAGGTGGGCTAACACCAGGTGTGGTGGGTGTGGCAGGAGCTACATCCTGGAATGAAACTTCCCAACCCAGGCCCCATCCCATCTTCCCCGGGGCCCCTCTCTCTGTGCCCCGGCTGCCCCCACAG
Seq C2 exon
GGCACGCCCGTGATTCCCCTGCTGACCTCGGTGCTCCTGGATGAGACACAGTGGCAGACCCCAGGCCAGTTCAACCCCGGCCATTTCCTGGACGCGAATGGGCACTTTGTGAAGCGGGAGGCCTTCCTGCCTTTCTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000073067-CYP2W1:NM_017781:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.290 A=NA C2=0.154
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.4=100)
A:
NA
C2:
PF0006717=p450=PD(13.1=58.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCAGGAGGAGCTAGACC
R:
GCAGAGAAAGGCAGGAAGGC
Band lengths:
321-1066
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)