BtaINT0046227 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017701 | CYP2W1
Description
cytochrome P450, family 2, subfamily W, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:20243]
Coordinates
chr25:42306656-42307147:-
Coord C1 exon
chr25:42306963-42307147
Coord A exon
chr25:42306798-42306962
Coord C2 exon
chr25:42306656-42306797
Length
165 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGA
5' ss Score
7.16
3' ss Seq
CTCACCTGGCGCCCCCACAGGGC
3' ss Score
8.43
Exon sequences
Seq C1 exon
GCCGTGTGCAGGAGGAGCTGGACCGCGTGCTGGGGCCCGCGCGGCTCCCGCGGCCAGAGGACGTGCACGCCCTGCCCTATACTAACGCCGTGCTGCACGAAGTGCAGCGCTTCATCACGCTGCTGCCCCACGCGCCGCGGTGCACGGTCGCCAACACCCAGCTGGGCCCCTACCTGCTCCCCAAG
Seq A exon
GTGCGAGGGCCAGGCCCCGCCGCCCCAGACCCTGCCTCCTCTGCTCTCGGCCGCGGTAGATGGGGCTGGGACGGGGTCGCAGGGACACAGACGCTGAGCAGGGCTTCCCGTGCTCCCGGTCTGCGGAGAGCAGCCAGCCCCGCCGCTCACCTGGCGCCCCCACAG
Seq C2 exon
GGCACACCCGTGCTGGCCCTACTGAACTCCGTGCTCCTGGACGAGACGCAGTGGAAGACGCCCCGCCAGTTCAACCCGGGCCACTTCCTGGACGCCAACGGGCGCTTCGTCAAGCGGCCGGCTTTCCTGCCTTTCTCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017701:ENSBTAT00000023544:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.4=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTATACTAACGCCGTGCTGC
R:
TGCGGAGAAAGGCAGGAAAG
Band lengths:
251-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]