RnoINT0044441 @ rn6
Intron Retention
Gene
ENSRNOG00000051770 | Cyp2w1
Description
cytochrome P450, family 2, subfamily w, polypeptide 1 [Source:RGD Symbol;Acc:1305193]
Coordinates
chr12:17383437-17383949:-
Coord C1 exon
chr12:17383765-17383949
Coord A exon
chr12:17383579-17383764
Coord C2 exon
chr12:17383437-17383578
Length
186 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
GGGATCCCTCTGCCTTACAGGGC
3' ss Score
7.75
Exon sequences
Seq C1 exon
GTCGTGTGCAGGAGGAGCTGGACCGAGTGCTGGGCCCTGGGCAGCTACCTCAACCAGAGGACCAGCGAGCACTGCCCTATACCAGTGCTGTGCTGCACGAGGTCCAGCGGTACATCACACTCCTGCCCCATGTGCCCCGCTGCACGGCTGCTGACATCCAGCTGGGTGGCTACCTGCTCCCTAAG
Seq A exon
GTGGGTCCCCACTTCTTCCCTTTGACTTGGGGTGGATAGAGGACTTCCTGGGTCTCATATTCACCTGCGAAAGAGGTTATTACCATGTGGTGCAGGCGGGAGGCAGGAGCTCCCCCAGACAGTGTTCTGCCCTCTTCTCCTAACTCTGAGCAGATCCGCCTACCCTGGGATCCCTCTGCCTTACAG
Seq C2 exon
GGCACCCCCGTGATTCCTTTGCTGACCTCAGTGCTCCTGGACAAGACGCAGTGGGAGACTCCAAGCCAGTTCAACCCAAACCACTTTCTGGATGCCAAGGGATGCTTTATGAAGCGGGGAGCGTTCCTGCCTTTCTCCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051770:ENSRNOT00000091003:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.290 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.4=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTATACCAGTGCTGTGCTGC
R:
CAGTGGAGAAAGGCAGGAACG
Band lengths:
252-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]