HsaINT0044226 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr19:41382432-41383282:-
Coord C1 exon
chr19:41383095-41383282
Coord A exon
chr19:41382574-41383094
Coord C2 exon
chr19:41382432-41382573
Length
521 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCTA
5' ss Score
2.48
3' ss Seq
AACTTCCTCCTCCCTACCAGGGC
3' ss Score
8.08
Exon sequences
Seq C1 exon
CCAAGGTCCATGAGGAGATTGACAGAGTGATCGGCAAGAACCGGCAGCCCAAGTTTGAGGACCGGACCAAGATGCCCTACATGGAGGCAGTGATCCACGAGATCCAAAGATTTGGAGACGTGATCCCCATGAGTTTGGCCCGCAGGGTTAAAAAGGACACCAAGTTTCGGGATTTTTTCCTCCCTAAG
Seq A exon
GTGCTATCCTCCCCACCCCCTAGACTACGGGGACTTCCAGCCCTTCTCTGTGTCCCCAGAATCCTGCCCCCATTAGAAGCTTTCTACTCACTGTCCCACTCCCTCAATCAGTCAAAAAGGACTTCCCCAACCACCACATCCATTCCACCTTTCCACTTAGACACTCCTGAGTCCTGCATCTCCCCAGACTCTTTGTGTCGGGAGAATCAAACTCAAGTTCCAAAACTTCCTATCTTAAGAAACAGAAGCCCCCTTTCCATTAGGCCTTTTGTCTTAGGGACACAAATTTCAGGTCCCCCAAACAACCTGCGTAGCAAGACATGGACCCCATGTCTCCCAAACTTCCTGTTTCAGAGATGTGAACCTTCTATTCCCCAAAGCTCCTCCTTCACAGGACCCCAACTCCTCCATGCCTGCCACTTCCCCTTACCTGGGGCACACTAGTTCCCCCTCCAGCCCCTGTGTACTTTCACCAATCCCCCGACCCTCCTCATCACACACAACTTCCTCCTCCCTACCAG
Seq C2 exon
GGCACCGAAGTGTTCCCTATGCTGGGCTCCGTGCTGAGAGACCCCAGCTTCTTCTCCAACCCTCAGGACTTCAATCCCCAGCATTTCCTGGATGACAAGGGGCAGTTTAAGAAGAGTGATGCTTTTGTGCCCTTTTCCATCG
VastDB Features
Vast-tools module Information
Secondary ID
-CYP2A7:NM_030589:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGGTCCATGAGGAGATTGAC
R:
CGATGGAAAAGGGCACAAAAGC
Band lengths:
330-851
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)