GgaINT0039374 @ galGal3
Intron Retention
Gene
ENSGALG00000010911 | F1NT95_CHICK
Description
NA
Coordinates
chr8:27475427-27476225:-
Coord C1 exon
chr8:27476038-27476225
Coord A exon
chr8:27475566-27476037
Coord C2 exon
chr8:27475427-27475565
Length
472 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
TTTTCTTTCTCTTGTCTCAGGGC
3' ss Score
11.3
Exon sequences
Seq C1 exon
CCCGTGTGCAAGCCGAGATCGATGCTGTCATTGGGCAGGCCCGGCAGCCATCCCTGGAGGACAGGAGCAACATGCCCTACACCAATGCCGTCATCCATGAAGTGCAGAGGAAAGGCAACATCATCCCTTTCAATGTACCGAGACAGGCGGTGAAGGACACAGTCTTGGCTGGTTTCCGGGTGCCCAAG
Seq A exon
GTAAGCTCGATTTGGATCAGTGAGGTCTGAGCAGGAGACTTCCATTCCCCCATTGCTGCAGGGACAGGGCTGCATCGTTGCTGGCTCTTATCGAGGTCACTCCTGTGGATCCTGTTGTTCTGCTCACCCAACGCTGCTCTCCAGCACACTGCATTCTCCATGCCCAGAATGAATGCCATGGGGTGCGGCATGCCTGCATATCAGGGAGGGACAGAACCCTCAGCATGCTGCTTTTTCGTAGGTGGACTTTTAGCAGTAGTAACATTTATGAGAGAAAAGTGTGGATATCTACTCATTGCATATCTAAATAGTCAAGGAGAAGGCACACATGGCCACATAAAAGGAGTGGAACACATGCTTGTCAGATTTGACTATGGATGCTCTTCATGGCAAGTGTATGGAGTGGTAAAAATCCCCCTCCTGTTGGCAGCGGCAGAGAGAGTGCTAAGTGATTTTCTTTCTCTTGTCTCAG
Seq C2 exon
GGCACTATTTTGATCCCAAACTTGTCCTCTGTGATGTTTGACATGAAGGAGTGGGAAACCCCTCACAGTTTTAACCCTGGGCATTTCCTGAAGGACGGTCAGTTCTGGAAAAGGGAGGCTTTTATGCCGTTTTCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010911:ENSGALT00000017750:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.7=100)
A:
NA
C2:
PF0006717=p450=FE(10.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGTGTGCAAGCCGAGAT
R:
AAAGCCTCCCTTTTCCAGAACTG
Band lengths:
310-782
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]