BtaINT0002936 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:M0QW09]
Coordinates
chr3:86538507-86542355:+
Coord C1 exon
chr3:86538507-86538694
Coord A exon
chr3:86538695-86542216
Coord C2 exon
chr3:86542217-86542355
Length
3522 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
GTCTTTTCTGCCTTCTCCAGGGC
3' ss Score
11.5
Exon sequences
Seq C1 exon
AAAAAGTCCAAGCTGAGATTGATAGGGTGCTTGGCCAATCTCAGAAACCAAGCATGGCCGCGCGAGAGTCCATGCCCTACACCAACGCTGTCATCCACGAGGTGCTGCGAATGGGGAACATCCTCCCTCTGAACGTGCCCCGGGAGGTGACAGTGGACACCGTCCTGGCTGGATACCGCCTGCCCAAG
Seq A exon
GTAATTAAGGGCTCACACCAACAGCCTCAGGTCTCCAAGTTCATATTTGTAAATGGTTGGAGTCTCAATAGGAAATGTGATGTGTTTTCGTGTCTTAGGGAAGCACTTAAATAGGGAGAGAGATATATTAATATTATTGCTGATGTAATAGTAGAATTTTTTTTTTCTTGTGGGGTTTTTAGAACGTTAGTTCAGAAAAACGTTAATAGGTGTTGTGGGAAAGTAAGGGGATTCCTAGGTCAAACATGTTTAGGCAAAGATTTGCTGTTTTAGATTTGAGATATCTCAGTGTTTTAATATGTGATGTGCATTGTTAATTCCTGTGGGGAGACAGCAGGCAGCAATTCTCAGTCAGACTTTGCCGTGAGGTCCTTTTCTTTGCCTTGGGAGAGCTTCTCACAGGATATGGACCTGCCACATGTATGTTGGAAAATTCTGCTTCACAATCCTGGTGGTTTAGAATATTGAAATATGAATAAATATTTGAGACCATCTCAAATCACTTTAAAGTGATTTGAACCAAAGTGAACCAAAATCACTTTAAAGTGATGTTTCTAACATAATGTCCCCAAATGTATTTTTCCAGCTCTGATGTACACCCTCTTGATGGGACTGCATCACAAGGGGAAACAATCCAAGTCCGTGTAGTACTAAATATCAGAAAAGGAGAGAAAGGAACGCGTGCTTTTTAAGCAGTAATTATGTGGCGTTGGTCTTCCCTGGTGGCTCAGACTGTAAAGAATCTGCCTGCAATGCAGGAGACCCACATTTGATCCCCGGGTCGGGAAGATCCCCTGGAGAAGGGAATGACAGCCCGCTCCAGTATTCTTGCCTGGAGACTCCAATGGAGAGAGTAGCCTGGCGGGCTGCAGTCCATGGGGTTGCACAGAGTCGGACACGGCTGAGCGACAAGCACACACACACCATGTGCCACTGGCTGCTCAGGCTCTCTCAGAACATCTGCATCGGTCCTCAGAATAATTTTGTTATCCTCATTTTACAAATTGGAACTTCAGGCTGAGAGAGTTACTAGTCTTTTAAAGACTTCTCAACTACAAAATGACCACAGTTGGCTTCCAGAAACAGAGATTTTCTGATTCCCAGGCTCATCTTTTTCTGTTCTACACCAAGTTCTCTCCTCAGGGGTTACTTTACTTTGCCTTTAAAAAAGTCTCCCTGCAATTATTCTCTGTGGGGCCCTGTCCTCACAAAGGCAATTCTGCTCTCATTCTGCCCGCCACTCTTAGGACCTCAGCAGACAGCTCTCCTGTGCCCCCGAGTGCCCTCTCTGCACACTGCGCATTCACAGTTCTTTCCTTTCTCACCCCTTGGTCCATCTCTGTGGATCCATTGCAGTTTGTCTGAGTTCCTCTGTGTGTGGAACCTGGGGCTGATATCAAGGCAGAACAGTAGGAACTGCCCCATTGCGTTCCCCTTTGTCCCCATCCTGCAGAGCTGGGAAAAGCAGCTATTCCTGCAATGATTGCGTTTACTATTCTCTTGCTGATTGACCATTTTGTGGGTGAAATCTGAAGTCTAAATGACTTCGCAGGTTATCTTTGTATATTCATACCAATTAATTTAGTTCCCGATAACCATTCTAAGTCAATAGACTGGTTATAACAAGTTTTCTTTTCTGATGTAGCATTCTGCAGGCCCAGAAAGCCAAGTAAAACTGAGTTTTAATAGCAGCTCGAATAATCACCCTGAGGGGTGGCATGCGCAGTGCTTCTCCACCCTTCTCTCAGCCCCAAGCGGAGGAGTTCTGAAGCGCTGGCTTCCAGGCCTCTGCAAGCAACCCTCTAGGAGCAAGTGATACTAGACTAAATGCAGAGGAAAAGAAGATAGGGCATTGGGTGCTGAGGAAAGGCAGGTACTTGCTGAAGGATACACGATGAGAATGCTCCTCAAATTGGGTTAAACTTAGGTCACAGAAAGCTAGGTCCTGGTTGATTAGCTCACAATGGTGGAGTAGAAGGACTTGAACTTAACCTTCTTATGCAAACACAAAAACCACAGATATCTTCTGAACAACCACTGACCAAAAAAAAAAAAAAAGGAAACCTACCAGAAAAGATACCCTACATCCAAAGATGAAGAAGCCACAGCAAGATGGCACGATTAGGATAAAGTCAAGTCCCATACTCACTGGGTGGGCAGTGCGCAAACAGGAAGCCAATTACGTCACAGAAATTCTGCCACAGAAGTGGAAGCCCTGAGCCCCATGTCAAGTGCCCCAGCCTGGGGGTTTGACAACAGGAGGAAGTGCCCCTACAGAACCTAGCTTTGAAGACCAGCAGGGTTTGATTGCTGGAATTCCACAGGACTGGGGGAAACAGAAGCGCCGCTCTTGGAGGGCACACACAAGGTGGTGTGCACCCCAGGACCCAGGGGAAAAAAGCAGTGACCTCGTAAGAGGCTGGAGCAGACCTACCTGCTAGTATTGGAGGGTGTCCTCGAAAGGCGGGGGGCAGCTGTGGCTCACAGCGGGGACAAACACGCTGGTAACTCCAGCAAATACTCATTGGCATGAAGATACCCAGAGGCTGCCATGCAAAACGGCATGGAAAGGAGTGGGGACAAACGACAGATTGAGAAATTGAAAGAGGCTGGATGTAGTGGGAGTGCAGGTAGAAGGACAGTGGCTCCAACAGGGCAGGTGATGTGTCCTTAATCTGAGAGTGATGGGAGCTCTTGAAGGCTGTCTGTCAAGTGCCAGGTATGGTGGGTGGACAGGACTAACATGATTAAATCATGTCCAGAGCTAACTCTGCTTTCATTGTGTTGAGAACATTGAAGGGGAAGAGAGGATATAGAGTTGTAGTCAGAGCTACTGTAGGAATGTGTGGACAACCAAGGTGGTACCTTGGACGTGGCAGTGGGCATAATGCAGGTGACAGAATCAAGAGAAATTTCAAGTAAAATTGACCAGCCTGCCTGAAGGACTGGATGAAGGCAAAAAGGGGGAAAGGGAGGCACTAAGGAGGACTCCTGGGTTTCTTGCTGTGTATCAAAAAGGATAGTGGTTCCTTCCACTGGGTGACCTGATTCTATCATTAAACCTTCTGTGGAATGTGCTAGATAATGGAGGGAGAAACTTAGACAAATGAGACATTTTTGTTATACAAACGGCCATAGTTACCACTTCACTGAGCAGCTGGGTTGATTTTGGTCCAGAACTGCCTGCCCACTGTCACATGGTTCATACCTGTTGCATACATGTTCATTGATTCATACGTGTTCCCTCCCAAGATCAACACTGAAAGGTCCCTGCAGAGATGCATTCTGCACCTAGAGTAGTCGTACTTCCCCGATCAAATTCCCAAAAGACAATTCCAGTCCACAATTTTAAGCTGACCCATGACAAAGAGCTGAGTCGCAGGGGCTGGGCTCTGAAGTAACTGGGTTGGGGAGTTTGAGGGAGTTTGGGGTGCCGTCAGCATTGATGTAGGAGACCGGGGGGCTGCTGCCCCATCCCACATGCGTGTTGTGTGTGTCATGAGTCTTTTCTGCCTTCTCCAG
Seq C2 exon
GGCACCATGGTCACGACCAACCTGACTGCACTGCACAGGGACCCTGCAGAGTGGGCCACCCCTGACACATTCAATCCAGAGCATTTTCTGGAGAATGGGCAGTTTAAAAAAAGGGAATCCTTTCTGCCTTTTTCAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013693:ENSBTAT00000018202:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.079 A=NA C2=0.064
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.6=100)
A:
NA
C2:
PF0006717=p450=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]