MmuINT0045083 @ mm10
Intron Retention
Gene
ENSMUSG00000081362 | Cyp2j7
Description
cytochrome P450, family 2, subfamily j, polypeptide 7 [Source:MGI Symbol;Acc:MGI:2449816]
Coordinates
chr4:96199336-96202176:-
Coord C1 exon
chr4:96201989-96202176
Coord A exon
chr4:96199475-96201988
Coord C2 exon
chr4:96199336-96199474
Length
2514 bp
Sequences
Splice sites
5' ss Seq
AAGGTGACA
5' ss Score
5.19
3' ss Seq
ATCTTGGCTTTCTCCTTTAGGGC
3' ss Score
11.12
Exon sequences
Seq C1 exon
AAAGAGTACACTCTGAGATTGATGGAGTGATTGGACAATGGAGGCAGCCAAGCACTGGTGACCGAGACTCCATGCCCTACACCAATGCTGTCATCCATGAGGTGCTGAGGATGGGCAACATCGTCCCCTTGAATGTTCCCAGGGAGGTAACAGCAGATAGCACGTTGGCTGGATTCCACCTGCCTAAG
Seq A exon
GTGACATTACACTTGCAGCTTCCCATCTTCAGTCTATTGTCATTATTTGAGTAACCTAGTCACAAAAGTAAAATTTACTTCTGCCCCAAGAAATCATTTAAAACTGAAGAGAGATTTTATTCATAGCAGAACATGAGCATTCCTCCTATGTGTGTCAGTGATGTTTATGTGTATCATGGGGAATACAGAAAAGGCAATTTCTTTTTGGAATTTGCTTAGTAAAAGACAGCTTTGTTTGCTAAAGAACATCCTCTTGTACTCCTGTGCTAATGTTCACTCATAAGAGTCAATATTTTTGCCATATCTGAAGTCACAGGTGGTTTTCCAGAGTTTTCTTAACATTCCACAGTTGAGAACATTCTATCACATAAAGAAATCTAGTCCAAAGTGAATCAGTAATTCTAAGAAAGGGACAGAAAAACACAGATAGTTGCCTAGAAAACATATATTGAGAATTCTCTTTATATCAAAATTTCATAATCCCCTTTTCATGAGTATTGATCACCTCTTTATTCAGTAAAAATTGTGATTAGGTGAAATAAGTTTGCATAATGTCTCTCTGCTACATTATACAATGTCCTAACCTTGGGATTTGGGAAGAAACTTGTTCAGATTATTTGTCCTGCCCAGGATTTATTATATTCATCATTAAAAGAGCTCCCTTATACTTTTATGCATGGGTCTTTCTTGCAATCCCACTGTTCCCAGACCCTAGCTTATAATCTACTCAGGATTTCTGCAGAGAGCTTTCCGGAGTACATTATACTCATTCTGCTTAAGGCACAATTATTATCCTTTCCATTCTTTCTCTATACTGTGTGCCAAACAAAATCAGACAGTTCTCTGCAGTAGCAAAATAAAATGTCTGGGGTTTTAGTTCAGCATGGTAGAAAAGGGGGAGCACAGCTGATCATTCTCATTCTGCCAGGAAGCAGAAAGAAAATCTTCAGGAAGTTTCCATCTCACTCCATTTATTCTACCCAGTTCTTCAGCATTGGAGAAGGTGCCACATATCAGGAAAGTCTACTGTCATTGTATAATGAGCTTTGCAGATGGTCTCACTGCTACTCTTACTGGTGTTCTATTATAATTTCCTGGACAATTCTAAATTACTCAGAATGTGTTGTTCTTAGGAAAGTTTTCAGAGTTCAGAGCAGAAGAGTCCATTCTGGAAACACAGATACAACCACTATAACACTTAGAAATAGAAAGCCTTAAATATACTATCAGCTCTAGACATTGACCGTCTAACTAGATACTATGCAAGTGAGTCAAAGAGCCATGGCTTTGATTTTACATGGACCTAGTTTCAGAAATGGCTGCATCTCTGCCTAGTATATGGCTGTAAGAAAACTGTTAATTTCTCATAGCATTGATCCCTGTATCACTATCATGACATAGAATAATGTACAGTCCTCACAAGAAGAGGTCATTCATGCAAAGCTTCCCACGCCATATAAGAGTTATAATTTTTATTTTTTACACATCTAAGATTTTCTGTCTGTAAAACATCCTAAAAAGGTGACCATGTAAGTGGAAGATTATAAATCATGAGAATGGCCAGAGGAAAGCACTCTGGCACTATCTAGAACTAGGTGCTCTGGGATGAAGCCCAGAGCCTGGGAGAGAACAAGAAAGGTTCTAAAGAAAACGATACAGGTTCTGACAACATGCAAGAGGATTAGTTTTATATCAGAGAGAAAATCTTTAAAGGGGATTGGTATGATTACCAATCTAAGAAAATAAATGCCAGCATATGATGTCTTAAGCAGTAGGGAAAACTGGCTTTGGGGAATCAAAGAATACCTCTTTATATTAGTACTGATGTAATTATACTACAGAATGGTTCATTAAAATAATGGAAGATGTGCATTTATAGTTATTAATGTGTATTTATGGCATAAGCATTGTCAGGTGTGAGCTAGATGAGGGTCTAAGTTATCAAGGAGGCAGGGGGATATTAGTACTGACATGACTCAATCAAGAGAGATTGAAAGAATGGTTTGGGACTTGGATGGAGTGAATGAGACAGTATGAGGTAAAGGCACACTCTAGGGAATCCAGGCATCATGCCAGGGAGGCTGGTGGACTGAGCTTGCTTACTCTACATGTTTGATGTGTTCCTACCCCTGCTGAGAGATTGAGTACAGCTACATACTGAAGGCTATGATGAGAGAGAGAAAGAGATGGTAGACACACGATCTTCTTTTGCAGACCTTCCATAGTCCTCACTATAGGAAGTAGCTATTTTGAAGGTTATCACCTCCAGTCAAATTATATTCCCATTGATGGTCACATGTCTTCTCCCTACCATATCCTGACCTATTCCCACAGACCAGCATTTTGTAATAAAACAAAGCCTAATGTCCCTGAAATGCGCTAAGCAAACACTGTCCATCAATGATCTGAACAAGGACAGGTTTTTGTGGGAGCTTAGGGTGTGAACAGGAATGGGATATTGGCAAGCCTCATCCATTGTGTTTATATCTCTTAGATCTTGGCTTTCTCCTTTAG
Seq C2 exon
GGCAAAATGATCCTCACCAATTTGACTGCTCTGCACAGGGACCCCAAAGAATGGGCCACTCCAGATATATTCAATCCAGAGCACTTTTTGGAGAATGGACAGTTTAAGAAGAGAGAATCCTTTCTGCCTTTCTCAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000081362:ENSMUST00000162514:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.127 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.6=100)
A:
NA
C2:
PF0006717=p450=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types