RnoINT0044400 @ rn6
Intron Retention
Gene
ENSRNOG00000030466 | Cyp2j16
Description
cytochrome P450, family 2, subfamily j, polypeptide 16 [Source:RGD Symbol;Acc:1561242]
Coordinates
chr5:119466060-119469939:-
Coord C1 exon
chr5:119469752-119469939
Coord A exon
chr5:119466199-119469751
Coord C2 exon
chr5:119466060-119466198
Length
3553 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACC
5' ss Score
9.24
3' ss Seq
ATCTTGGCTTTCTCCTTTAGGGC
3' ss Score
11.12
Exon sequences
Seq C1 exon
AAAAAGTACATTCTGAGATTGATAGAGTGATTGGCCATGGGAGGCTGCCAAGTACAGATGACCAAGATGCCATGCCCTACACCAATGCTGTCATCCATGAGGTTCTGAGGATGGGCAACATCATCCCCTTGAATGTTCCCAGGGAAGTGACAGCTGATAGCACATTGGCTGGATTCCACCTGCCTAAG
Seq A exon
GTAACCTTGCATTTTTAGCTTCCAATTTCCAGTCAATTGTTGTCATTATTGGAAGAACCCAATCATAAAAAGTAAAACTTATTTCTGACCCAAGAAACCATTTAAAATTAAAGATTTTATTCATAACAATTTCCAGTCAATTGTTGTCATTATTGGAAGAACCCAATCATAAAAAGTAAAACTTATTTCTGACCCAAGAAACCATTTAAAATTAAAGATTTTATTCATAACAGAATGTGAGCATTCCTCCTATGTGTTTAAGCAATATTTATGTATATCATGGGGAATACAGAAAGGGAAATACCCTGGTTAAATTTGTTCAGTCAAAGACAGCTTTATTTGCTAAAGAATACTCTCTTGTCTTCTTGTGCTAATGCTCACTCATAAGAGCCAATATTTCTTTGCCATTTGTGAACTCACAGGTGGTTTCCCATCATTTTCTTACTCTCTCACAGTTGAGAACTTTCTATCTCATAAAGAAATCTAGTCCAATCTGAAATAGTAACTCTAAAAAAGGAAAAAACCATATCATTGCCAAAAAAGCAACACAAAACATGTATTAAGAATTCTTATTTTTCAAATAGTTACTAAATCCTCTTTTCATAAGTTTGATCCTTTCTTTATTCAGTAGAAATTGTGATTAGGTGAAATAAGTTTAGATAATGTCCCTCTACTACAATATACAGTAACCTAACCTTGGTATTTAGGAATAAACCTGTTCTGATAATTTTTCCTGCTCAGGAATTATTATATTAGTTATTGAAAGATCTCCCCTATACTTTTAACCCTGGATCTCTCTTACAGTCATTCTGATCACAGACCCTAACATATGATCTACTCAGGATTTCTGCAGAGATCTCTCCTGAGAATATCATACTCTCTCTGTTCAAGGCACAATTATTATCCTCTCCATTCTTTCTCTACACTGTATACCAAACAAAATCTGACATTTCTTCATAGTAGCAAATTAAAAGCCTGAGGTTTCAGTTCAGCATGGCATCCAGTGGGAGGCACAACAGAGCAAGCTTCAAGTTTATAGCCAGGAAGCAGAAAGACTGCAGGAGGCTATCCTCCAACCCCATTAATTCTATCCAGTTCTTCAGTGTTGGAGAAGGTACCACATATCAGGAAACTCTACTGCCAATAGGTAGTGAACTCACACAGATGCTATCACTGTTGTTTTATTACGATAGCCTCGACAATCATAAATTACTCAGAATGTGTTGTCACACAGTAAAGTCTTCAGAGTTTAGAACAGATGAGTCTATTCTGGAAACACAGATACAACCATAACTATAACATCTAGAAACAGAAAACCTCAACTATGTCATTGACAATGGCTTGTCAATTTCAAATATAGCTCAGCTCTAGACACTGACAGTCTAACTGGATAGGATGCAAGTGAATCAAACCACCAAGGCTTTGATTTTACTTGGATTTAGTTTCAGAAATGGCTGCATCTCTGCCCACTGTCTGACTCTAAGAAAACTGTTTATCTCTCATAGCATTGTTTCCTACGCCTCTATCATTACAGAATAATGTATAGTCTTCACAGGGAGAGATCATTAATAAAGAGCTTCCCACTAGATATAACAGTTATAATTTTTATTGTTTACACACCTTAAGATTTTTCTGTCTGTAAAACATTCTGAAGAAAGTGACCATGTAAGTGGCAGATTATAAATTATGAGAGTGTCCAGAGGAAAGCATCCTGTGCTGTCTAGAGGTAGGTAGGCTGGGATGAGACCCAGAGCCTGGGAGGAACAAGAAAGATTCTAAAGTAAAAGGTGCAGGTTCTGAATAGAGAGGTAGTAGGCTTTAGTCTGACAGCATGAGGGAGGATTAGTATTCATGTCAAGGAGACAATGATTTTTTTTCTTTTATTTTTTTTAAATTTACACTTCAAATGTTATTCCCTTTCCTGGTTTAAATTTACACTTCAAATGTTATTCCCTTTCCTGGTTTCTGGGTTTCCCGGTTTCCCAGACATAAGCCCCCTATCCCATCCCCGTCCCCGTCTTCTATAAGGGTGTTCCCCACCCCATCCACCCCCTTCTCATCCCTTCGACATTCCCCTACACTGGGGGGTCCAACCTTGGCAGGACCAAGGGTTTCTCCTTCCATTGGTGCCCAACAAGGCCATCCTCTGCTACATATGCAGCTGGAGCCATAGGTCAGTCCATGTAGAGTCTTTGGGTAGTGGTTTAGTCCCTGGGAGCTCTGGTTGGTTGGCATTGTTCTTATGGGGTTGTAAACCCCTTCAGATCTTTCAATCCTTTCTCTAACTTATCCAACGTGAATTCCATTCTCAGTTCAATGGTTTGCTGCTAGCATTCGGCTCTGTATTTGACAAGCTCTGGCTGTGTCTCTCATGAGACATCTATACCCTGTTCCTATCAGCATGCCCTTCTTAGCATCATCAATTTTATCTAGTTTTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATATATATATATATATATATATATATATATATATATATATATATATATATTGTATACCCATGTGGGGCAGGCTCTAAATGGCCATTTTTTCAGTCTCTGCTCCAAACTTTGCCTCCGTATCCCCTCCTATGAATATTTTTTAAGAAGGAGACAATGTTTAAAGGGGATGGGAATTGGGGTTGGGGATTTAGCTCAGTGGTAGAGTGCTTGCCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCAAAAAAAAAGAACCAAAAAAAAGGGGGGGATGGGAATTATTACAAAACTGAGAAAGGAAATACCAGCATGTGGCATCGTAGGCAGTAGGGAAATCTGGCTCTGGAGAATCAAAGAATGCCACTTCACATACTGAAGAGTGGGTAAAGAAAATGATGAGAAATGGGAGTGTGTGGTTATTAAGCTCTATTCGTGCTATAAGCATTGTCAGCTGTGGAACAGGTGAGGCTCTAAAATATCAAAGAGATAGGAAGAAATAATAACTTACATGACACAAGAGGGATTGAAAAACTGGTTTGAAAATTAGATGGGGTTGATGAGACATTATGAGGTAAAGACACACTCTGGGGAGCTCAGGCACCATGACAGAGAGAATGGTGGACTGGGCTTGCTTATGCTATATGCCTGATGTACACGTTCCTAACCCTGCTGAGAGAATGGGTTCTGAAGCTACATACTGAGAGCTAAGAAGAGAAAAGGGATCGTAGACACAACTTTTTTTCCCCAGACATCCCATATTCCTCACTGTAGGAAGTAGCTGGATTAAAGGTTTTTCACTCCCTTTATTTTCTCATGTATGGCCAAATGTCTTCTCCCTACTATATGCTGACCTATTCCCACAGACCAGAATTTTGTAATAAAAACAAATGCCTAATGTCCCTGAAATATCTTAAGCAGATACAGACCATCATTGATCTAAACTAAGGACAGGTTTTTGTGGGAGCTTAGGGTATGAACAGAAATGGAATATTAAGAAGCCCCATCCCTTGTGTCTAGATCTGTTCCGTATTTCAAGCCTTAAATCTTGGCTTTCTCCTTTAG
Seq C2 exon
GGCAAAATGATCCTGACCAATTTGACTGCTCTGCACAGGGACCCCAAAGAGTGGGCCACCCCAGACACCTTCAATCCAGAACATTTTTTGGAGAATGGACAGTTTAAGAAGAGAGACTCTTTTCTGCCTTTCTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030466:ENSRNOT00000089521:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=NA C2=0.085
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.6=100)
A:
NA
C2:
PF0006717=p450=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]