GgaINT0037610 @ galGal3
Intron Retention
Gene
ENSGALG00000018634 | E1C4W1_CHICK
Description
NA
Coordinates
chr8:27464191-27465031:-
Coord C1 exon
chr8:27464844-27465031
Coord A exon
chr8:27464330-27464843
Coord C2 exon
chr8:27464191-27464329
Length
514 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
TTTTCTTTCTCTTGTCTCAGGGC
3' ss Score
11.3
Exon sequences
Seq C1 exon
CCCGTGTGCAAGCTGAGATCGATGCTGTCATTGGGCAGGCCCGGCAGCCGTCCCTGGAGGACAGGAACAACATGCCCTACACCAATGCCGTCATCCATGAAGTGCAGAGGAAAGGCAACATCATCCCTTTCAATGCATTGAGACTGACAGTGAAAGACACAGTCTTGGCTGGTTTCCGGGTATCCAAG
Seq A exon
GTAAGCCCACTCCTGGTGAATGAGGTATTAGGAGGAGACGTCCATTTCCCCATCCCTGCAGGGAGAAAACTGTAGCATCCCAGCCCCTTACAGAGGTCAGTCCTGTGGATCATGCTGTTTTGTTGTCCCAACACTGTTTTCCCACACTTTGCATTCTGCATGCCCAGGATGAATGCCCAAGGGTGAGGCAACAGTGCATATCATGGAGGGACATATCCCTCCTACTACAGACTTTTCTTAGAGGAAATTAAGCTGAAGAAGGAAAACTGTTGTTATACAGTAAAGACTGAACTTTTCTGGTCCCTTTCAATTCAAATGACTGTATGATTCTATGATTGTTCCTTTAAGCAGCCAAGAAGTAGGAAAATATGGCCAGGCAAAAGGAGAGAAACACATGCCTGTAACAGATTTGACTATGAATGATCTTTGTGGCAAGCAAAAAGAAGGGTAAAAATGTCTCTCTTGGTGGCGGTGGCAGAGAAGGTGCAAAGTGATTTTCTTTCTCTTGTCTCAG
Seq C2 exon
GGCACTATTTTGATCCCAAATCTGTCCTCTGTGATGTATGACAAGAAGGAGTGGGAAACCCCTCACAGTTTTAACCCTGGGCATTTCCTGAAGGACGGTCAGTTCTGGAAAAGGGAGGCTTTTATGCCATTTTCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018634:ENSGALT00000017753:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.7=100)
A:
NA
C2:
PF0006717=p450=FE(10.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGTGTGCAAGCTGAGATC
R:
AAAGCCTCCCTTTTCCAGAACTG
Band lengths:
310-824
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]