DreINT0056549 @ danRer10
Intron Retention
Gene
ENSDARG00000014439 | dgkza
Description
diacylglycerol kinase, zeta a [Source:ZFIN;Acc:ZDB-GENE-111104-3]
Coordinates
chr7:38835721-38836666:+
Coord C1 exon
chr7:38835721-38835765
Coord A exon
chr7:38835766-38836596
Coord C2 exon
chr7:38836597-38836666
Length
831 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TTTGTTCTTCACATTCACAGGAA
3' ss Score
8.54
Exon sequences
Seq C1 exon
GACTTTGTGTCGTGTAACCCGTCTCTGCAGCGGCTGGTGCTCCAG
Seq A exon
GTGGGTGAGACACCTGCGAGAGGTGAGACAGGAGCACTTTCAGGAACAAGACTGGAAATACAGCCTGCGCAAAGAGTCGAGAAAACCAAATTCTGTGCTGTTTGTACTAGAGCCCATCAGCTTTTGATGGACATTTATCCACAAACTTTTAAAATCTCTAAAAATAGGCTCGGAGGCAGACATGTTTACCGGAAGAGTACATAAACCTCCAGAGAGATAAAATAAGCAGGAGAGTTTGTTTTCAGATAGAGCTTAACATGATCTCCAAAGCAGAATATTCTCCAATTCGTCCTAAATCTCATCCACATCATTCTCTGTAAGATTAGAGCACTCTAGCGCCTCCTAGATACTAGTCGCTTTGCAGACGTGAAGAAAACCCTCATTAGTTCGGCGTTCCCTTATGACAGATGTTATGGGTGAAGCTTCAAATAAGCACAAATTATAGGAAGCGCTTGCTAAGCTAAATCCACTCGCTCTGGATATTTCCCCTGGGTCCTAAGTGCTCCCGTGTGCTTTGTGTGGATACCTTCAGTCGTGTTTAGCTTCTGTCGAGAATGGCAGCTTACTGTATAGTGATGGCGCATGCAGTTGTTGTACTGTGAGTGAAGTCTTGACTCTGTTGCATGACTTAGTCGTAGATGTTCAAGTGGCAGTTTAGAGCTTTGTAGAAAGAAATGAATTGATGTGACAAGCAATAATGGCAGGTCTGTCTGTGTTTGTGTGGTGAAAGTGAACTTTTCCTTTTGTTTGATTGGCATGAACTGACATTAATCAGAACTCTTGTCTTTTCTCCTTCCCATCTTCTACCCCGTTTGTTCTTCACATTCACAG
Seq C2 exon
GAAGGTGACGGGAGCAAATCAAAGGCTTTGTCGTCTCAGAGGCTATCACCGAAATGGTGCTTTCTCGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014439:ENSDART00000093009:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.167
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]