GgaINT0054701 @ galGal3
Intron Retention
Gene
ENSGALG00000008380 | DGKZ
Description
NA
Coordinates
chr5:25814571-25816016:-
Coord C1 exon
chr5:25815937-25816016
Coord A exon
chr5:25814641-25815936
Coord C2 exon
chr5:25814571-25814640
Length
1296 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
ATTCTCTTTTTTCTATACAGGAA
3' ss Score
10.88
Exon sequences
Seq C1 exon
CTGTGCCGCTGGGGATCATCGTGGTTCCAGGGGACAGTGACCTGGAGTTGTGCCGGACCCAAATTGAGAGGCTGCAGGAG
Seq A exon
GTGAGGCTCTGTGTGGGAAGAGGTTGTGGTTGAGCGCTGAGTTTGAAGGGAATCAGAAAAAGGATTTCTAGGCCGCCTTGATATCTGCCTGCACCAACACACACATTCTGGCTGCTGGTAGGAGCTCATGATTTGCTTTCACCACATGGTGGAGGCAGGTTCCTGAGCTGGATGGCATGGTTCTCCCTGCTGTTCAGCAGCTTACTTCTTCGCATTGCTCTTCTGACTGTTCTCCAGGCCCCGAGTGTCATCGGCCCAGAGAGATTCTGTGGCAGAAGAAAAAGCCAGCACAGGGCCTGCCTCTTCCTAGGTGTCTGGGGAGGCTTTTCCTCTGTCCATTTGTTTGCTGTACTGTGTGTTCCTTCAACCTCCTTTCAACCTTCTACAGGCTCTACATTTCCAGGCACAACTTCACTTCTCCCTTGGTGCCTGGATTAGGGCTGTTTTCCCCCTCCAATACTCTTTGTTTGCAAGTAGTAACTTCTGTGCTCCGGCCAGTGTGCTAATGTATATGTCCCCAACCTGTACACAGGCTGCATAACCTTTACTTCTGATAAGCAATGCCTTATGAGACCACAGTGTGGCTCCTGGTGTTGTACTGCACAATCCATTTTTCTCCCAGTCTACAGGACTTTGCTCAGACCACAGTCCACAGTAGGCACTTGCAGCCTAGGGCATCTCAGGCATGAGGCTAGGAGACTCTTAAGCTCAGAGGATACCACTTTCCCACATCATCAGCCTGGTAGCTGCCTCCAAAGCTGTGCTGATGTTCCTTGGTCACCTAATGTTTTCCCTCTTTTCTGTTCTTGAGCTAAATTGTGTCTTCTGATTCTGAATCAGGGCAGAGACTTTGGCCCGGCAATGTGTAAAGCTGCTTGCCATATCTGCAGTAGGGTGACAGTGCAAACCTCTGTGGGACCAAAGAAAGGATAGGGGGCTGCCCAGGCAAACACTGTAACAGCACACCTTGCCTTTCTGCAGGATTTCTCTCCACAGCCCTCTGCTTTGCAGCGCCTGCTCTTTCAGGTGTGTATGGCATCTCACCATCCCTCAAGCCCATCTGTCATGTGCATCATGCTTGTCTTGTGGGCTCACCTTGTGGCACTTCTCCAGTGAGCTGGTACATCAGCTCTGCTCTGTCCCATGCTGCTCTCCATCACTGTGTTCAAAGTTCCCATTTCTGTCCGAGCACCTGCAGCCCTCCAATCTGCAGGGACCTCCCAAAGCAGGAGGGACACACTGGGGAGAGAATAGAGGGGCCAAGAGACATCACTGTATTCTCTTTTTTCTATACAG
Seq C2 exon
GAAGGAGATGGAGCCAAACCGAAGACATTGTCATCCCAGAAACTGTCACCAAAATGGTGTTTCCTGGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008380:ENSGALT00000038374:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=NA C2=0.354
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]