DreINT0056561 @ danRer10
Intron Retention
Gene
ENSDARG00000014439 | dgkza
Description
diacylglycerol kinase, zeta a [Source:ZFIN;Acc:ZDB-GENE-111104-3]
Coordinates
chr7:38812561-38813388:+
Coord C1 exon
chr7:38812561-38812632
Coord A exon
chr7:38812633-38813331
Coord C2 exon
chr7:38813332-38813388
Length
699 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGA
5' ss Score
2.37
3' ss Seq
TTTTCCTCCTTGTTTTTCAGATA
3' ss Score
12.73
Exon sequences
Seq C1 exon
TTATTGGATTGGAATGCTCCACCTCAGGGGGAGGGGCTTGATGAGATGCCTCTCAAAGAGCCGTCATTCAGA
Seq A exon
GTGAGAAACCCTCTAGCTTTTTCTCAGACTCATCTGGGGCTAATGGATCACTTACACAACTGATCTTAGTGACGACTGGTGACTGTCTGGCTTGATAAACCGAGAACATCTAATCGACAAAAGCCCTGCTAACATCTGGAGCCACCCGCGGTCCATGCAGACTGTGAAGTGGGCATCCGTGATTTCTATTTCTTGACTTGATTGTTTCGAAGTCAAGACAAAAACTGGATTTGGCCTGAAGGTTTTCCTGCCAGACATGTTATTTAACTCTTTAGTCTTTTAATCATAATTATTTTTTTGATTTGGCAGTGTCAGGTCTTTGGGTGTCCTTTTATCCACAAGCCACATTTTCTGTGTGAGCTCAGAATTCAATCTAGCTGGTGTCTTCGACAGTTTATTTCTGGTACGTGGGGCTGATTTTGGTGAAATTATGTCTGATCAGGGATGATTTTAATCATACTTAACACTAACCAGGCTAATAAACTCAGAGATGAAGGTAAGGTAAGTGCTACTTTTGGTTTCAGTAGCTTCCAGTAGAGATCTAGAGGGAATCTTCAAGATTTAGCATAGTTTCTGGAAAATGATCATAAAAAAGTTTGTGGTTTTAATGAGCTGGTTTACTTTATGGAGCTACTGGTGTTTATATTAGGTTAAATCCCAAATAATATTCTTAAAAAATTTTTCCTCCTTGTTTTTCAG
Seq C2 exon
ATAAACTTCAGATGTAAACCGTCTTTCAGGGAGTCAGGATCACGGAACATCCGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014439:ENSDART00000093009:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=NA C2=0.018
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(3.7=8.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]