GgaINT0054683 @ galGal4
Intron Retention
Gene
ENSGALG00000008380 | DGKZ
Description
diacylglycerol kinase zeta [Source:RefSeq peptide;Acc:NP_001026363]
Coordinates
chr5:22968361-22968817:-
Coord C1 exon
chr5:22968740-22968817
Coord A exon
chr5:22968418-22968739
Coord C2 exon
chr5:22968361-22968417
Length
322 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
CATATGTGTTCAATCCACAGATA
3' ss Score
9.02
Exon sequences
Seq C1 exon
CAAAAACCTCTCTCCAGGCGTAAGTGTGCAGCATGCAAGATCATAGTGCATACACCCTGCATAGAACAGCTGGAGAAA
Seq A exon
GTGAGTAAAACCTGTTAAGCCCTCTCTGTGGCTTGCAAAGCTCTGACAGTCTGATACTGGCCATTCCTTTCTCTGGGGTAGCATAGGATTGGAAACCGCAATGTGCTGCTGGAAAAAGGGGCACTATGAGGAGACAGTACCAAAAGGAGCACTAATTACTCGATTGGGACTTCTGGGCCCATTTTGTTTAGTGACAGAGGTGGTGGGTTTTGCAGTCAAGCACTGAACATCGCCAGAGGTTCTGCTATAGTCAAATAAACTCCAGTAGGTTTCCTCTTGGTGGTGCTTTTACTGATTCCTATCATATGTGTTCAATCCACAG
Seq C2 exon
ATAAATTTCCGCTGCAAACCTTCCTTCAGGGAGTCGGGATCTCGGAATGTACGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008380:ENSGALT00000038374:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]