DreINT0056593 @ danRer10
Intron Retention
Gene
ENSDARG00000076025 | dgkzb
Description
diacylglycerol kinase, zeta b [Source:ZFIN;Acc:ZDB-GENE-111104-4]
Coordinates
chr25:7699152-7699374:+
Coord C1 exon
chr25:7699152-7699229
Coord A exon
chr25:7699230-7699317
Coord C2 exon
chr25:7699318-7699374
Length
88 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
3' ss Seq
AATGTGCGCTTTCCCTACAGATT
3' ss Score
11.64
Exon sequences
Seq C1 exon
CAAAAGTCTCTTCCCCGCCACAAATGTGCAGCTTGCAAAATATCAGTTCACACAGAGTGCATGAATCAGCTGGACAAG
Seq A exon
GTTAGAAGTTTGTAGAAACAACTTTTGAACGATTTGGGGTGTAATAACAATGTATCTTCTCAAAGGAAAATGTGCGCTTTCCCTACAG
Seq C2 exon
ATTAACTTCAGGTGTAAGCCAACTTTTAAAGATCCAGGGACGAAAAATGTCAGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076025:ENSDART00000155016:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.316
Domain overlap (PFAM):
C1:
PF0013017=C1_1=FE(43.9=100)
A:
NA
C2:
PF0013017=C1_1=PD(8.8=26.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAAGTCTCTTCCCCGCCAC
R:
TTCTCTGACATTTTTCGTCCCTGG
Band lengths:
135-223
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]