BtaINT0048723 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013636 | DGKZ
Description
diacylglycerol kinase, zeta [Source:HGNC Symbol;Acc:HGNC:2857]
Coordinates
chr15:77238537-77239879:+
Coord C1 exon
chr15:77238537-77238614
Coord A exon
chr15:77238615-77239822
Coord C2 exon
chr15:77239823-77239879
Length
1208 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
GGTCACTGCGTGTTTCACAGATA
3' ss Score
7.46
Exon sequences
Seq C1 exon
CAGAAATCAGTGTCCCGGAGAAAGTGTGCAGCCTGCAAGATTGTGGTCCACACACCCTGCATTGAGCAGCTCGAGAAG
Seq A exon
GTGAGCGTGGCTGTTCAGGCTTTCCTGCCCCTCCCCCTCGGGCTGCTGAAGCCCTCACGGCACTCCTACACAGGTCTCTGTACACGTGTGTTCACGTCACACAAACAACACCGGCCAGGGGTGCCTCAGTATGTACAGTGGTGAAAAAACCAAGGACCCTGGAGCCGCAGTGCCTGCGTTTGCATCCTGGCTCCCCCTTCATTTGCTGCTGTGTCCCTGCTGCCCAGAACAAGCCTGGCACAGAGCGAGGTTCATAAGACTATTACTAGACAAGATGAAGTCATGAATGCTGGCTGAGATACCATTTTTATCAGTTCCCAAACTAATACTTAGAAGGGGCTGAGCCTTTGTACCTCAGCTCTGTCTGGGCCAGTCCTGTGTGGGCCCTGAAGCCCGGCCCTGTCCCCTCCACTAGTGGAGAGGAGGAGGGCTGTAAAGACCTTTTCCCAGGGACCATTGTCCACAGAGCAGCTGCAGCTAGGGGCGCGTCTGGGCCCCCCGCTTCTAGGGAGGGAGGGAGAAGGACAGCTGGGTGAGTGGGTCCAGGCCCAGGGATTGGGGGGCTGCCGTGGCCCCGCAGGACTCCCCACCAGCAGAAACCAAGACCAGCGTAAGAAAAATCCTGTAGGACTAGGAATGGCTTGAACGAGGCTGACGCAGACGGCTTCCGCTACTCCTCAACTCATACAGTGAACTTTCCCTACAGTTTTCCTAGGGCCGAAGCAGGGGCCCTGAGGAAAAGAGAGACGCCTGTAGCCCCAAGTCCCGTAGATCCGTCACACCAGCCCCTAAGGTGATAAACCAGGACTCCACAAATGGGCTGACGGCTCCAGGGACCAGTCCACAAGCATGGGCTGGGTTGCCTGCAGGTGCCTAAGTTGGGAGAGCTGGAGGGCGAGGAAGAGTACAGGACGGGTCAGCCTTGCTGCCTTTTAGTGGGGAAGACGGATACAGAACTTGCTGTCTCCCTCATCCCAGAAGACTGGGCAGCGGAAGGGAGCTTCCTTCTGGCTAGTGGAGAGGAGGAGGGATGCCAGAGGGCCTCTGAGAAGAGGTGTCTGGTGTTCTCAGGGCCCCCAGGATGCTGGGGGGCCTCTCCCTCCTTTGTGAGGACGCTTCCTGAGTGACACCTTCTGAAGAGGGTGGCCATGTGCCTGACCCCACAAGGGGCGGTTCTGACATTTCGGCGGTCACTGCGTGTTTCACAG
Seq C2 exon
ATAAATTTCCGCTGTAAGCCATCCTTCCGTGAATCGGGCTCCAGGAACGTCCGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013636:ENSBTAT00000018128:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.053
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development