DreINT0056582 @ danRer10
Intron Retention
Gene
ENSDARG00000076025 | dgkzb
Description
diacylglycerol kinase, zeta b [Source:ZFIN;Acc:ZDB-GENE-111104-4]
Coordinates
chr25:7726222-7726542:+
Coord C1 exon
chr25:7726222-7726262
Coord A exon
chr25:7726263-7726342
Coord C2 exon
chr25:7726343-7726542
Length
80 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTT
5' ss Score
8.17
3' ss Seq
AGCATTGCATGTCTCCGCAGGAG
3' ss Score
8.22
Exon sequences
Seq C1 exon
GTACAACTGCAGATCGTTTCTACCGAATAGATCGTGGTCAG
Seq A exon
GTACTTTGACACTTTACATCTCTATTACGCGACACACTGTGCTGTTTTTTTTTACCCTACAGCATTGCATGTCTCCGCAG
Seq C2 exon
GAGCATCTAAACTATGTGTCGGAGATCTCCCAGGATGAGCTTTTCATCTTGGACCCGGAGCTGGTCACCAAGGAGACGGTGGGCACGTCGCCCGGAATGCCGGGGGCGATGGAAACGGTTGTTGGGGGATGTGGATGTTCCAACAGCACAGACCAGTTCGCTTTTCCTGCCTGCTCTCCAGGGCCTTCTCCACTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076025:ENSDART00000155016:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.343
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCAGATCGTTTCTACCGA
R:
GGAACATCCACATCCCCCAAC
Band lengths:
177-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]