GgaINT0054703 @ galGal3
Intron Retention
Gene
ENSGALG00000008380 | DGKZ
Description
NA
Coordinates
chr5:25812508-25813222:-
Coord C1 exon
chr5:25813182-25813222
Coord A exon
chr5:25812699-25813181
Coord C2 exon
chr5:25812508-25812698
Length
483 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GGCTGACTTTTGCATTCCAGGAG
3' ss Score
7.02
Exon sequences
Seq C1 exon
CAACCACAGCAGATCGGTTCTACAGGATAGATCGTGCACAG
Seq A exon
GTGAGTGTGGGAAAAACAGCCTGAAACATAAGCTCTGAGGTGGGGGAAATTCAGGGGCCACTGAAAGCCACTCTGACTGCTTGAGGCTGGGATGCCTCCAGGCATCATGAGGGCTGTGCTTTGGGCTGGGGCAGAAATCCTGCGAAGGCCTGAGGTCCTCTTGAAAAGGGGTGGGATTTGTGCCAGGCTGGGGTGAGGACTGAGGGAATCGAGGCAGGAAAAGCATGCCTGACCATAGCCTCAGGCACTGGTGATGACAAGCTTCACAGGAGTGGACCAGGTGGGACGCAGCTCCCTTCTTTTCTCCATGTCTGACTCCTTGAGACTCCACACGGTGCCCCTTCCTCTCAGCTTCTGTCAGCTATAGTCCTGTGGGCAGAGGCTTTTCAGAGTGGGATGCAAGGTGTGGGGTTTGAGGGGATGGGAGATGAAGCTATACAGATGTAGGTCTTGCTTCCAAAGAGGCTGACTTTTGCATTCCAG
Seq C2 exon
GAGCACCTCAACTATGTGACAGAGATCTCTCAGGATGAGCTCTATGTACTGGACCCAGAGCTGGTGATCACCCAGACCGTAGGCACATCTCCTGCCATGCCTGATCTTGTTGACTCATCTGCCACACCTCCTGGGCACCACTTTGCTTTCCCATCCTCTTCTTCCTCTCCACCCTGCTCTCCTGCCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008380:ENSGALT00000038374:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.547
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCACAGCAGATCGGTTCT
R:
CTGGGGGCAGGAGAGCAG
Band lengths:
232-715
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]