DreINT0057233 @ danRer10
Intron Retention
Gene
ENSDARG00000062154 | dip2ca
Description
DIP2 disco-interacting protein 2 homolog Ca (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-031118-39]
Coordinates
chr24:27094780-27097027:+
Coord C1 exon
chr24:27094780-27094846
Coord A exon
chr24:27094847-27096887
Coord C2 exon
chr24:27096888-27097027
Length
2041 bp
Sequences
Splice sites
5' ss Seq
GAGGTGACA
5' ss Score
3.85
3' ss Seq
TCTGATCTTATTCAATTTAGGCC
3' ss Score
8.04
Exon sequences
Seq C1 exon
GTCTGCGGCCGGAGGTCATCTGTCCGTGTGCCAGTTCAGCTGAAGCCCTAACTGTGGCCATCAGGAG
Seq A exon
GTGACACATCCACCCAACACATCATAACCAAAGATTTAGATCTTCCTGTCGCTCATTTATTAGATTCTAAATCCAAAACATCAGGAAAAGTAATGGAAATATGGATACAAGCCATGTTTGTGTCAGTTAGACAGACAGATCGAAGCTGATGGTTCATGGAGAGAGTCTGTGTATATATTCAGCGCTATTTTCCATAACCATTTACCAGAAAATAATGTTTTTTTAGGCCGCCTCTATAATTACAGCCTCGACATCTTTGCTTTGTGACTGAATCAAACTGGCGACAGAGCACAGAGCATATGGTTATCATTCCACAGGATTAACTCTGTCGCTGGACGCTTTTACCAACGAGTTTGTGGAAGAGAACAGCTTGTATGAATTTGAACAAATGTCAGATGAATTGCACCCTAATAAAAAAGCCTGGTGTCATTGACGGAAACATCGCCAACCAGTGAAGTCAGAGGAAAAAGCTGTTTCAAATGCGAGTGGCGCTACGTAATTCCGCTGTTTCTGTCATCAAAGTTACGTCATTGTCGTTTGTGCATTTACAGAGCAAACTAATAGTAACCTAAATTTCACTCTTTGGTTTAGTTCATGTGGTTTGCGGTAATAATTTCCTTCCTCTCAATATTTCATTCACATTTCAAAGCTCTGAATGATTGATCCAACATTTCTAAACTTTTGGTCTGTCCCAAATGAGCTGCTTACTTTGCATTTAAAAGCATCAGACTGTATGAATGTTGTTAAGAGAACTAGGGAAAAAATAAATGAATACATATACACTACCTTACAAAAGTCTTGTTGCCTATACAAGTTTTAGGAATAACAAATAATAACTTGACTTCTTGTTGATCATTTGGTATCAGAAGTGGCTTACATGAAAGGCCTCTAGATTACGCTTATGTTACTCAATTAAAATATGATCATGCCTTGATTTTGAATTATTTCATTAGGACAGTAAGGTCTGATTTCGCTTGGACAAAAGTCTTGTCACTTAACAGAAATAATCTACAGCATAAAATATATAAAGTCATGGCGCAGTTGAAAAATAATTAATACTGTGTATGACTCCCATGAGCTTGGAGAACTGCATCCATACATCTCTGCAATGACTCAAATAACTTATTAAGTCATCTTGAATGCCAAAGGAAGCGTTCTTGCAGAGTTTATTAAGATTCTTTGAATTCATCTTCAATGCCTCCTTATTCATCCTAACCCAGACATGCTCAATAATGTTCATGTCTGGTGATTGGGCTGGCCAATCCTGGATCACCTTGGCATTCTTTGCTTTTTGGAACTTTGATGTGGAGGTTGAAGTATGAGAAGGAGCGCTATCCTGCTGAAGAATTTGCCCTCTTTTGTGATTTGTAATGTAATGGGCAGCACAAATGTCTTGATACCTCAGGCTTTTGATGTTGTCATCCACTCTGCGGATCTCTTGCACACCCCATACTGAATGTAACACCAAACCATGATTTTTCCTTCACCAAATTTGATTTCTGTGAGAATCTTGGGTCCATGCGGGTTCCAATAGGTCTTCTGCAGTATTCGTGATGATTGGGATGCAGTTCAACAGATGATTTATCTAAAAAAAAAAAAAAATGTACCTATTGCCACTTTTCCAAATCATCACCTAGAAGTCAAGTTATTATTTGTTGCTCTTACAACTGGGATCGTCGACAAAACTTTTGTCAGGTTGTGTATAAGATACTACTATTTACTCAATCAGTTCCTTAAGAAAGACATCAGTTTCTTAGGAAACAGCTTCCTATATGTGTGCAGACATCAAGTCAGCATGCTATTTTTGGAACAGAGCTCTAATTCCGGTATACTGAATCAGCACAAACTGTTTCATGATTTTTTTTCTGCTCAAATATGGTTTGCTATACCTTGCCAAACATCTTTCACTCAGATGTGTGCACCTTTTAAAACACTATATATGTTCTGTCCTTAAGAACTGATTGGACCAATCAGCATCTTCTTCTTCTGTTTTGCATTGTATTAAAGTCACCATATATTTATCTGATCTTATTCAATTTAG
Seq C2 exon
GCCCACAGATGACAGTAATCAGCCGCCGGGTCGAGGTGTGCTGTCTATGCAGGGTCTGAGCTATGGTGTCATCCGAGTGGACTCAGAGGAGCGTCTGTCTGTGCTCACCGTACAGGATGTGGGCACTGTGATGCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062154:ENSDART00000137212:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.113 A=NA C2=0.229
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(4.8=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(10.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]