DreINT0057979 @ danRer10
Intron Retention
Gene
ENSDARG00000100115 | dnah1
Description
dynein, axonemal, heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-081015-3]
Coordinates
chr11:34423962-34424310:-
Coord C1 exon
chr11:34424197-34424310
Coord A exon
chr11:34424112-34424196
Coord C2 exon
chr11:34423962-34424111
Length
85 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGG
5' ss Score
10.26
3' ss Seq
ATATGCTGTGTGTTCCTCAGGCC
3' ss Score
10.09
Exon sequences
Seq C1 exon
GTGAAGACGTTTGTATTTGAAGGCATGGAAATTGCTCTTGTTTCATCCTGTGCGGTCTTCATAACTATGAATCCAGGTTATGCTGGTCGTACTGAACTTCCAGATAATTTAAAG
Seq A exon
GTACGGAGCTTGCCAACACCAATCTACACTTTTGATAAATATGTCAGTGTGTATTTACAAAAAAAATATGCTGTGTGTTCCTCAG
Seq C2 exon
GCCCTCTTCCGTCCAGTGGCTATGATGATCCCTGATTACGCCATGATAGCTGAGATCTCCCTTTACTCATTTGGCTTCAGCGATGCCAAAGTCTTATCCAAAAAAATCACCAGCACCTTTAAACTGTCCTCAGAACAGCTCAGCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100115:ENSDART00000161471:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(16.5=100)
A:
NA
C2:
PF127742=AAA_6=FE(21.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGTCGTACTGAACTTCCA
R:
AGCTGAGCTGTTCTGAGGACA
Band lengths:
178-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]