GgaINT0019475 @ galGal3
Intron Retention
Gene
ENSGALG00000004297 | DNAH1
Description
NA
Coordinates
chr12:2893550-2894135:+
Coord C1 exon
chr12:2893550-2893663
Coord A exon
chr12:2893664-2893985
Coord C2 exon
chr12:2893986-2894135
Length
322 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
GCTGGAACTGTATATTGCAGGCT
3' ss Score
3.87
Exon sequences
Seq C1 exon
GTGGATCGCTTCATGTTTGAGGGAAAGGAGATCCCTCTGGTCCCATCCTGTGCAGTCTTCATCACAATGAACCCTGGATATGCAGGACGTACTGAATTACCTGATAACCTGAAG
Seq A exon
GTAATGAGAGCAGAGAGCACAGACAGAAAGAAGAGGTGTGATACATGTACTGGATGCTAACCAGACTACCAGTGTGGTCATTGCAAGGATTAGGAAATAATGTTTTGGAAGGTTTCTAGGATCGCTTTCAGCTTTGAATCACATCTGTAAGCAGATGGTTCTCCTCTTTCAATCTGCAGGCGTGCAGGTGTCAGGTACACTCATGCTGTGCCCTCAGCACAGTCTGAGACACAAACTCAGCCTTTTCAATTTGCTGGAAAAAGCAAGGAAAAAAAAAAAACAAACCTGTGGTTTTATCTTGTGCTGGAACTGTATATTGCAG
Seq C2 exon
GCTCTCTTCCGTCCCGTGGCTATGATGGTCCCGGATTACTCCATGATTGCTGAGATCTCCCTCTACTCCTTTGGGTTTAATGAAGCTAAAGTCCTTGCAAAGAAGATCACCACAACATTTAAGCTGTTGTCAGAGCAGCTCAGCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297:ENSGALT00000006843:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(16.0=100)
A:
NA
C2:
PF127742=AAA_6=FE(21.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATCGCTTCATGTTTGAGGG
R:
CTGGGTGCTGAGCTGCTCT
Band lengths:
263-585
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]